Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0401
         (668 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    24   1.3  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    24   1.3  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   1.7  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    22   4.0  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   5.2  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   6.9  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   9.1  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 170 EVHYDAPVVFVFLCFHLDKSSRLQKRLQVLRL-SYERPKLV 51
           EV++ AP+       HL+  S LQ ++  L++   E+ KL+
Sbjct: 234 EVNHSAPITTCNKKQHLESPSALQAKVDPLKIPEAEKRKLI 274


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -2

Query: 313 SPGGHGTLVSPS 278
           S GGHG+L+SPS
Sbjct: 50  SMGGHGSLLSPS 61


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 16/61 (26%), Positives = 25/61 (40%)
 Frame = +3

Query: 261 KTATGGDGETNVPCPPGESGDVQVVPVVHTLIYQISSLRVYYPKDLRPSDNRKSVLKTIG 440
           K   GG G  N   P G S  V  V          SSL+      ++ S  ++ ++++I 
Sbjct: 523 KGGGGGSGSGNNQPPGGPSSHVSAVLTCKVCDQAFSSLKELSNHMVKNSHYKEHIMRSIT 582

Query: 441 E 443
           E
Sbjct: 583 E 583


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/22 (45%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
 Frame = +2

Query: 404 FGQ-SEICIEDYRRGEKEVPRW 466
           FGQ   IC+        EVPRW
Sbjct: 19  FGQFCAICVPKITSTNNEVPRW 40


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 423 VLKTIGEVKKRFPDGPPLLNPINDM 497
           V+  I E+   FP  PP L+ I+D+
Sbjct: 524 VISLIDEISFTFPPSPP-LSQIHDL 547


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/43 (25%), Positives = 14/43 (32%)
 Frame = -2

Query: 364 IWYISVCTTGTTCTSPDSPGGHGTLVSPSPPVAVFTCSRMSTI 236
           IWY    T   TCT   S     T   P+       C +   +
Sbjct: 29  IWYWQCNTDEETCTRISSTVSRNTDTYPTLETCRLVCGKYGAL 71


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 603 TAAYDKKQELYE 638
           TA  ++KQELYE
Sbjct: 297 TATMEEKQELYE 308


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,466
Number of Sequences: 336
Number of extensions: 3270
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)