Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0401
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 128 7e-31
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 101 9e-23
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 29 0.46
SPBC1539.10 |||ribosome biogenesis protein Nop16 |Schizosaccharo... 29 0.80
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 27 2.4
SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase Alg11|Schiz... 27 3.2
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.3
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 26 5.6
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 26 5.6
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 26 5.6
SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizo... 25 9.9
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 25 9.9
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 25 9.9
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 128 bits (309), Expect = 7e-31
Identities = 75/223 (33%), Positives = 120/223 (53%), Gaps = 6/223 (2%)
Frame = +3
Query: 15 YSTIRTQLDLLGDQFRSFITKPEYLKPFLQPGRLVKVKTEKYEYDWGIIVNFRHKSNKGK 194
Y T++TQL+ R+ + P + FLQ GRLV+VK ++DWG++VN +
Sbjct: 694 YHTLKTQLERYRTDVRTVVNHPNFCLSFLQGGRLVRVKVGNEDFDWGVVVNVSKRPLP-- 751
Query: 195 KGQEENPLTAEPAIIVDILLHVKTATGG----DGETNVPCPPG--ESGDVQVVPVVHTLI 356
KGQ L E + IV L+ V + TG G PP + G +VVP + + +
Sbjct: 752 KGQSNEYLPQE-SYIVHTLVMVASDTGPLRIRSGHLPEVHPPAAEDKGKFEVVPFLLSSL 810
Query: 357 YQISSLRVYYPKDLRPSDNRKSVLKTIGEVKKRFPDGPPLLNPINDMKINDSVFKQCVDR 536
I+ +RV+ P DL+ + +V K + EVK+RFP+G LL+P+ +M I + F + + +
Sbjct: 811 DGIAHIRVFLPNDLKSQGQKLTVGKALSEVKRRFPEGITLLDPVENMNIKEPTFIKLMKK 870
Query: 537 IKLLEERLYSHPIHTDKNRSALTAAYDKKQELYEELQNAKAEL 665
+ +LE RL S+P+H A Y +K L EE+++ K +L
Sbjct: 871 VNILESRLLSNPLHNFSELEEKYAEYLRKLALLEEVKDLKKKL 913
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 101 bits (242), Expect = 9e-23
Identities = 54/225 (24%), Positives = 116/225 (51%), Gaps = 4/225 (1%)
Frame = +3
Query: 3 SVASYSTIRTQLDLLGDQFRSFITKPEYLKPFLQPGRLVKVKTEKYEYDWGIIVNFRHKS 182
+V + ++ QL+ G++ + +T P+ P+LQ GRL+++K + WG++VN +
Sbjct: 606 AVKEFHDLKLQLEKYGEEIQKVMTHPDNCLPYLQSGRLIQIKLGGIIFPWGVLVNVIKRE 665
Query: 183 NKGKKGQEENPLTAEPAIIVDILLHVKTATGGDGETN----VPCPPGESGDVQVVPVVHT 350
++ P ++D+LL + + + + + N VP P E+ ++V V+ T
Sbjct: 666 FDPNTREQVAP---HETYVLDVLLPISSNSMSNHKVNPSILVPPRPNETPLYEIVSVLLT 722
Query: 351 LIYQISSLRVYYPKDLRPSDNRKSVLKTIGEVKKRFPDGPPLLNPINDMKINDSVFKQCV 530
+ ISS+R+Y P++L ++++ + + EV + F + P L+P+ M I S +
Sbjct: 723 AVCNISSIRIYMPRELNSNESKLRAYRRVNEVIEEFKE-IPYLDPLEHMHIESSTLSLSL 781
Query: 531 DRIKLLEERLYSHPIHTDKNRSALTAAYDKKQELYEELQNAKAEL 665
++++LE +L+ P + D A + KK L ++++ ++
Sbjct: 782 RKLEILEPKLFDSPYYKDSKHRAEYHEFRKKLNLRAQIKDISTKI 826
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 29.5 bits (63), Expect = 0.46
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Frame = +3
Query: 321 DVQVVPVVHTLIYQISSLRVYYPKDLRPSD----NRKSVLKTIGEVKKRFPDGPPLLNPI 488
D+QV ++ ++SS V +DLR SD N SVL+TI V R P + N +
Sbjct: 1728 DLQVSSDINVRNDRLSSF-VMSSEDLRSSDGHPENSDSVLETISSVHHRSPINQVVRN-L 1785
Query: 489 NDMKIN-DSVFKQCVDRIKLLEERLYSHPIHTDKNRSALTAAYDKKQEL 632
N+ +++ DSV +++ L + + TD N AL K +EL
Sbjct: 1786 NESQLSLDSVISMNLNKEFALTK---TENDFTDDNGRALNYFSQKLEEL 1831
>SPBC1539.10 |||ribosome biogenesis protein Nop16
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 28.7 bits (61), Expect = 0.80
Identities = 18/88 (20%), Positives = 37/88 (42%)
Frame = +3
Query: 357 YQISSLRVYYPKDLRPSDNRKSVLKTIGEVKKRFPDGPPLLNPINDMKINDSVFKQCVDR 536
Y + YP R +++R+ + + E+KK P G ++ +D I + + +
Sbjct: 61 YVTGGVEKLYPDPKRENEDRELTSEELDELKKSLPPGQAIVRRDDDGNIIEIIHGEAKTL 120
Query: 537 IKLLEERLYSHPIHTDKNRSALTAAYDK 620
+L++ + P T+ R A K
Sbjct: 121 DDVLDKEISIAPAKTEVVRQLEEEAVKK 148
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 532 IESSYWKKDYTHIRSIQTKTEAP*QLLTTRNKSYMKSYRTLKR 660
I + + K H + +QT Q+LT + KSY K Y TLK+
Sbjct: 104 IIAPFSKMSIDHSQKLQTSQ----QVLTNQIKSYEKKYYTLKK 142
>SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase
Alg11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 471
Score = 26.6 bits (56), Expect = 3.2
Identities = 17/75 (22%), Positives = 34/75 (45%)
Frame = +3
Query: 255 HVKTATGGDGETNVPCPPGESGDVQVVPVVHTLIYQISSLRVYYPKDLRPSDNRKSVLKT 434
H+ + G D + +V PP + +++ + I + + Y RP N ++VL++
Sbjct: 243 HIASLWGKDIQLSVVFPPCNTSELEKID-----INRKREPTLLYLAQYRPEKNHENVLRS 297
Query: 435 IGEVKKRFPDGPPLL 479
++ PD P L
Sbjct: 298 FALYFEQHPDSPAKL 312
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 26.2 bits (55), Expect = 4.3
Identities = 30/121 (24%), Positives = 47/121 (38%)
Frame = -2
Query: 559 SLSSNNLILSTHCLNTESLIFISLMGFNSGGPSGNLFFTSPIVFNTDFRLSEGLKSLG*Y 380
SLSS+++I S+ S ++ +S P + FTSP + L
Sbjct: 34 SLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSSSFTSPASSSFITSLVSSSSQQSSS 93
Query: 379 TRRELIWYISVCTTGTTCTSPDSPGGHGTLVSPSPPVAVFTCSRMSTIMAGSAVKGFSSC 200
+ L S T ++ SP S L S S + S S+ M+ S++ SS
Sbjct: 94 SSASLTSSSSATLTSSSSASPTSSSSSHALSSSS---SSLVASSSSSGMSSSSLSHSSSV 150
Query: 199 P 197
P
Sbjct: 151 P 151
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 25.8 bits (54), Expect = 5.6
Identities = 18/85 (21%), Positives = 37/85 (43%)
Frame = +3
Query: 294 VPCPPGESGDVQVVPVVHTLIYQISSLRVYYPKDLRPSDNRKSVLKTIGEVKKRFPDGPP 473
+ C S +++ P++ T+I + + D L G V+K PP
Sbjct: 1439 IKCGQLLSSKLRLGPLLTTVIKLVIEYSQAKHAAIILKDASNYTLAAHGNVEKAESFEPP 1498
Query: 474 LLNPINDMKINDSVFKQCVDRIKLL 548
++ +D+KI DS+ + D +++
Sbjct: 1499 VILSQSDVKIPDSLLSEVFDHCRIV 1523
>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 154 PQSYSYFSVFTLTSLPGCKKGFKYSG 77
P SYF+ F L ++P KGF SG
Sbjct: 354 PADDSYFTSFPLPTMPSEAKGFIESG 379
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 25.8 bits (54), Expect = 5.6
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = -1
Query: 227 LGRQRILFLSFLAFVRFMSEVHYDA---PVVFVFLCFHLDKSSRLQKRLQVLRLSYERPK 57
L R ILFL+F + +S + ++A V+F+ L ++ + LQK + L Y R K
Sbjct: 722 LDRLAILFLTFSPTMCMLS-ISFEALFYVVLFITLGLWMELETELQKYTEQLHPEYSRKK 780
>SPAC23G3.11 |rpn6||19S proteasome regulatory subunit
Rpn6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 25.0 bits (52), Expect = 9.9
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +3
Query: 456 FPDGPPLLNPI-NDMKINDSVFKQCVDRIKLLEERLYSHPIHTDKNRSALTAAYDKKQEL 632
+ D L+N + +++K D K + + LLE ++Y + K R++LTAA +
Sbjct: 141 YTDAINLINTLLSELKRMDD--KMLLTEVHLLESKVYHAIRNIPKARASLTAAKTSANAV 198
Query: 633 Y 635
Y
Sbjct: 199 Y 199
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 393 DLRPSDNRKSVLKTIGEVKKRFPDGPPLLNPINDMKINDSVFKQCVD 533
D++ + + SV ++I EV DGPP+L + + V + VD
Sbjct: 959 DMQFTSEKPSVDESITEVDDAIKDGPPVLAETLTNSLMEDVGPENVD 1005
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +3
Query: 426 LKTIGEVKKRFPDGPPLLNPINDMKINDSVFKQCV 530
+KT + KKRFP+ + N ++ ++ F V
Sbjct: 469 MKTFEDCKKRFPNSSEVYNYFGEILLDQQKFDDAV 503
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,642,783
Number of Sequences: 5004
Number of extensions: 56419
Number of successful extensions: 169
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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