Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0401
         (668 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0490 - 3782195-3782305,3782929-3783021,3783199-3783294,378...   136   2e-32
12_01_1023 + 10458092-10458397,10459126-10459254,10459335-104595...   100   1e-21
08_01_0055 - 375343-375567,375672-377540                               29   4.4  
04_04_1641 + 34993807-34994589,34994924-34995022,34995521-349956...    28   5.9  
04_01_0330 - 4369326-4370852                                           28   7.7  

>11_01_0490 - 3782195-3782305,3782929-3783021,3783199-3783294,
            3783373-3783521,3783886-3784039,3784110-3784205,
            3784290-3784379,3784856-3785014,3785150-3785371,
            3785552-3785668,3785753-3785824,3786768-3786836,
            3786947-3787051,3787248-3787562,3787814-3788809
          Length = 947

 Score =  136 bits (328), Expect = 2e-32
 Identities = 73/222 (32%), Positives = 120/222 (54%), Gaps = 2/222 (0%)
 Frame = +3

Query: 6    VASYSTIRTQLDLLGDQFRSFITKPEYLKPFLQPGRLVKVKTEKYEYDWGIIVNFRHKSN 185
            +A Y  +   +  L  +  S + +PE    +L PGRLVKV+    ++ WG++VN   K  
Sbjct: 522  LAEYHKLGLDISELEKKIMSEMIRPERALLYLVPGRLVKVRDGSTDWGWGVVVNVVKKPP 581

Query: 186  KGKKGQEENPLTAEPAIIVDILLHVKTATGGDGETNVPCPP--GESGDVQVVPVVHTLIY 359
            +          +     IVD LLH  +++  +G  + P PP  GE G++ VVPV   L+ 
Sbjct: 582  QSGTLPPALSASRGNNYIVDTLLHCSSSSNENGSRSKPLPPRPGEKGEMHVVPVPLPLLS 641

Query: 360  QISSLRVYYPKDLRPSDNRKSVLKTIGEVKKRFPDGPPLLNPINDMKINDSVFKQCVDRI 539
             +SS+R+  P DLRP + R+++L  + E+ KR+P G P L+PI DM + +    + V ++
Sbjct: 642  GLSSVRINIPPDLRPPEARQNILFAVQELGKRYPQGLPKLDPIKDMGLQEPELVELVHKL 701

Query: 540  KLLEERLYSHPIHTDKNRSALTAAYDKKQELYEELQNAKAEL 665
              LE++L SHP+H         + Y +K EL  E+Q  K+++
Sbjct: 702  DDLEQKLCSHPLHKSDQSEQQLSWYQRKAELNHEIQMLKSKM 743


>12_01_1023 + 10458092-10458397,10459126-10459254,10459335-10459553,
            10459649-10459987,10460095-10460199,10460697-10460807,
            10461438-10461688,10462023-10462146,10462440-10462716,
            10463212-10463357,10463449-10463598,10463678-10463910,
            10464246-10464375,10464406-10464510,10464636-10464914
          Length = 967

 Score =  100 bits (239), Expect = 1e-21
 Identities = 68/230 (29%), Positives = 111/230 (48%), Gaps = 12/230 (5%)
 Frame = +3

Query: 3    SVASYSTIRTQLDLLGDQFRSFITKPEYLKPFLQPGRLVKVKTEKYEYD---------WG 155
            ++ SY  +  Q   L    R  +  P+Y+ PFLQPGRL +V+    E           WG
Sbjct: 548  NLKSYYDLLQQYKNLKKDVRDIVHSPKYVLPFLQPGRLARVQYSTDEQSTFSIDENITWG 607

Query: 156  IIVNFRH-KSNKGKKGQEENPLTAEPAIIVDILLHVKTATGGDGETNVPCPP-GESGDVQ 329
            + +NF   K++   +  E++  T      VD+L     +    G+  +   P  + G+  
Sbjct: 608  VTINFEKVKTHSEDRRPEDSDYT------VDVLTRCSVSKDKSGKKTMKIIPLKDRGEPV 661

Query: 330  VVPVVHTLIYQISSLRVYYPKDLRPSDNRKSVLKTIGEVKKRFP-DGPPLLNPINDMKIN 506
            V+ +  + I  +SS+R++ PKDL P + R++ L+ + EV  RF  DG PLL+P  DMK+ 
Sbjct: 662  VISLPLSQIDGLSSIRMHIPKDLLPVEARENTLRKVDEVISRFAKDGIPLLDPEEDMKVQ 721

Query: 507  DSVFKQCVDRIKLLEERLYSHPIHTDKNRSALTAAYDKKQELYEELQNAK 656
             S F++   RI+ LE     H +H   +          KQEL  +++  K
Sbjct: 722  SSSFRKASRRIEALESLFEKHDVHNSPHIKQKLKVLHAKQELSTKIKAIK 771


>08_01_0055 - 375343-375567,375672-377540
          Length = 697

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = -2

Query: 595 LLFLSVWIGCEYSLSSNNLILSTHCLN---TESLIFISLMGFNSGGPSGNLFFTSPIVFN 425
           L  L V IG E + ++ N ++  +CL+    E++  + +M FN   PS   + T    ++
Sbjct: 509 LFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTIINGYS 568

Query: 424 TDFRLSEGLKSL 389
            + R+ +GL  L
Sbjct: 569 QNGRIEDGLTLL 580


>04_04_1641 +
           34993807-34994589,34994924-34995022,34995521-34995648,
           34996095-34996235,34996456-34996542,34996627-34996780,
           34998569-34998628,34999019-34999447,34999524-34999819,
           35000278-35000407,35000690-35001187
          Length = 934

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +3

Query: 486 INDMKINDSVFKQCVDRIKLLEERLYSHPIHTDKNRSALTAAYDKKQELYEE 641
           IND +  D++FK+   ++  L   +YS+ IH       +  A +  +E+ E+
Sbjct: 380 INDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNMERAEELVREMEED 431


>04_01_0330 - 4369326-4370852
          Length = 508

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -2

Query: 310 PGGHGTLVSPSPPVAVFTCSRMSTIMAGSAVKGFSSCPFL 191
           PGG  T  +P+PP  +++ S      A +       C FL
Sbjct: 70  PGGETTTTAPAPPTKLYSISDRRAAAARAGEAAMRGCFFL 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,392,559
Number of Sequences: 37544
Number of extensions: 374253
Number of successful extensions: 1157
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)