Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0401
         (668 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57947| Best HMM Match : DSHCT (HMM E-Value=1.2e-08)                 78   6e-15
SB_20663| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   1e-04
SB_32670| Best HMM Match : CIMR (HMM E-Value=0)                        33   0.21 
SB_6123| Best HMM Match : MutS_III (HMM E-Value=1.8e-09)               33   0.21 
SB_52003| Best HMM Match : BTB (HMM E-Value=1e-16)                     31   0.64 
SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)                   30   2.0  
SB_50638| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00033)        29   2.6  
SB_30869| Best HMM Match : DUF164 (HMM E-Value=0.18)                   29   2.6  
SB_24440| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)                 29   3.4  
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)        29   4.5  
SB_48377| Best HMM Match : Spc97_Spc98 (HMM E-Value=8.3e-26)           28   6.0  
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86)               28   7.9  

>SB_57947| Best HMM Match : DSHCT (HMM E-Value=1.2e-08)
          Length = 183

 Score = 78.2 bits (184), Expect = 6e-15
 Identities = 36/76 (47%), Positives = 51/76 (67%)
 Frame = +3

Query: 441 EVKKRFPDGPPLLNPINDMKINDSVFKQCVDRIKLLEERLYSHPIHTDKNRSALTAAYDK 620
           EVKKRFPDG PLL+PI DM I D   K+ V +I++LE R+Y+HP+H D     L +  +K
Sbjct: 1   EVKKRFPDGLPLLDPIEDMGIKDDGLKKIVRKIEMLEHRMYTHPLHKDPELDKLYSLCEK 60

Query: 621 KQELYEELQNAKAELE 668
           K  +  E++ A+ EL+
Sbjct: 61  KAMVSNEIRAARKELK 76


>SB_20663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 37

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 21/36 (58%), Positives = 29/36 (80%)
 Frame = +3

Query: 330 VVPVVHTLIYQISSLRVYYPKDLRPSDNRKSVLKTI 437
           VVPV+  L+ +ISS+R+Y PKDLR  D+R+SV K+I
Sbjct: 1   VVPVLMHLVKRISSVRLYIPKDLRSLDSRQSVGKSI 36


>SB_32670| Best HMM Match : CIMR (HMM E-Value=0)
          Length = 1441

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = +3

Query: 282 GETNVPC-PPGESGDV-QVVPVVHTLIYQISSLRVYYPKDLRPSDNRKSVLKTIGE 443
           G TN+PC P G +  V Q++P       Q+ SL VYY ++LR +D   ++    G+
Sbjct: 353 GSTNIPCEPDGTNASVCQIIPDSR----QVVSLGVYYKQELRYADGELTLTYKSGK 404


>SB_6123| Best HMM Match : MutS_III (HMM E-Value=1.8e-09)
          Length = 730

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +3

Query: 345 HTLIYQISSL-RVYYPKDLRPSDNRKSVLKTIGEVKKRFPD 464
           HT + ++S + +VY+  D +P+    ++L    E+KKR+P+
Sbjct: 27  HTRMKEVSRICKVYFSSDTKPAAKTNNLLCQYNEIKKRYPE 67


>SB_52003| Best HMM Match : BTB (HMM E-Value=1e-16)
          Length = 501

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -2

Query: 187 LFDLCLKFTMMPQSYSYFSVFTLTSLPGCKKGFKYSGLVMNDRN 56
           + D+C  F+    S  + SV    S   CK+ FKY G+VMN R+
Sbjct: 324 ILDICKHFSSPGSSKLFSSVRRSPSRSTCKR-FKYFGIVMNGRS 366


>SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)
          Length = 1097

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = -2

Query: 355  ISVCTTGTTCTSPDSPGGHGTLVSPSPPVAVFTCSRMSTIMAGSAVKGFSSCPFLPLFDL 176
            +  C+  T CTSP   GG   ++  +       CSR     + +AV G S  P   L   
Sbjct: 890  VEACSAVTPCTSPSEAGGCFKVIPSTSLNGAVACSRGPPSTSPNAV-GVSGVPMATLITA 948

Query: 175  CL-KFTMMPQ 149
             L ++   PQ
Sbjct: 949  SLSRYPPPPQ 958


>SB_50638| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00033)
          Length = 311

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/94 (21%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
 Frame = +3

Query: 390 KDLRPSDNRK-SVLKTIGEVKKRFPDGPPLLNPI-NDMKINDSVFKQCVDRIKLLEERLY 563
           K L+ ++  + ++L  +GE K +       LN + ++++I +   K+     K +E+R+ 
Sbjct: 27  KQLKQAEESECALLAELGESKSKLRRAEKELNTLQHNVQIAEDACKEKEKAKKQMEQRMA 86

Query: 564 SHPIHTDKNRSALTAAYDKKQELYEELQNAKAEL 665
              +       +L     + ++L ++ + AKAEL
Sbjct: 87  EIGVEKGNVERSLEEVQSQNKDLMQQAERAKAEL 120


>SB_30869| Best HMM Match : DUF164 (HMM E-Value=0.18)
          Length = 442

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/45 (31%), Positives = 28/45 (62%)
 Frame = +3

Query: 534 RIKLLEERLYSHPIHTDKNRSALTAAYDKKQELYEELQNAKAELE 668
           +I+ ++ER +   IH D  R+ L +A +++Q +  ELQ   +++E
Sbjct: 393 KIQSMKERRHEIGIHKDMLRAQLKSAEEERQTVSAELQERISKIE 437


>SB_24440| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 437

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -3

Query: 648 SVALH-ITLVSC-RKQLSGRF-CFCLYGSDVSIVFL 550
           S  LH I L  C  +Q+ G F C CL   D+SI+FL
Sbjct: 159 SFGLHTIFLAKCDAEQIDGSFDCVCLQEMDISIIFL 194


>SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 307 GGHGTLVSPSPPVAVFTCSRMSTIMAGSAV 218
           GGH TL   SP +A F+C  +++  +G+ +
Sbjct: 93  GGHNTLKHHSPSMAPFSCEPITSSASGNGI 122


>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
          Length = 876

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 384 YPKDLRPSDNRKSVLKTIGEVKKRFPDGPPLLNP 485
           YP+D  P D R  + K   EV++ FP   P+  P
Sbjct: 285 YPRDYPPDDYRPPLKKMRPEVEEPFPPPKPITAP 318


>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
          Length = 2122

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 483 PINDMKINDSV-FKQCVDRIKLLEERLYSHPIHTDKNRSALTAAYDKKQELYEELQNAK 656
           P +D    DS   ++   RIK LEE ++ H +     R+ LT    +  +L  EL NA+
Sbjct: 335 PTDDFSAFDSEELERSNYRIKELEELVHQHEVENSSLRNNLTRTSSQVTKLKCELDNAQ 393


>SB_48377| Best HMM Match : Spc97_Spc98 (HMM E-Value=8.3e-26)
          Length = 495

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +3

Query: 195 KGQEENPLTAEPAIIVDILLHVKTATGGDGETNVPCPPGESGDV 326
           +  + +P  A+  + +D   H  T      +++   PPG SGDV
Sbjct: 445 RSHQASPHLAQLLLRIDFNKHFSTTPSWTTDSSTSLPPGSSGDV 488


>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1011

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -2

Query: 352 SVCTTGTTCTSPDSPGGHGTLVSPSPPVAVFTCSRMST 239
           S  +T +T ++P +PG  GT  +PS P A  T S  ST
Sbjct: 495 STPSTPSTPSTPSAPGTPGTPSTPSTPSAPGTPSTPST 532


>SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86)
          Length = 1110

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = -2

Query: 319 PDSPGGHGTLVSPSPPVAVFT----CSRMSTIMAGSAVKGFSSCP 197
           PD    HGTL SPS  V V T     S  ++ ++ +A  GF+S P
Sbjct: 394 PDMSPFHGTLTSPSGNVYVATTDEFTSGHASGLSSAASSGFTSAP 438


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,021,699
Number of Sequences: 59808
Number of extensions: 435241
Number of successful extensions: 1391
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1388
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)