Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0400
         (728 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    23   3.3  
EF532798-1|ABQ08060.1|   50|Tribolium castaneum acetylcholineste...    22   5.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   5.8  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    21   7.7  

>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 627 IAFFSHSASLIPASRLARATPTS 559
           IAF+ H+ +L+ AS+    +P+S
Sbjct: 254 IAFYGHAFTLVDASQHDLGSPSS 276


>EF532798-1|ABQ08060.1|   50|Tribolium castaneum
           acetylcholinesterase protein.
          Length = 50

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 601 PNTSISVSQSYTNVSVPLHVGRLRLPQAG 515
           PNT+IS    Y N+ VP    RLR+   G
Sbjct: 5   PNTNISEDCLYLNIWVP---QRLRIRHHG 30


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 447 TSGAATSRTKPANWSLSLYTSSTVRVPR 364
           TS ++T+  KP +  L++    T+ +PR
Sbjct: 431 TSTSSTNSNKPNSSDLNMLIKETMPLPR 458


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +2

Query: 101 TIVGGWAWAWCLVTDVQRIS 160
           T+VGG  +A+CL+  ++ ++
Sbjct: 80  TLVGGPEYAYCLLPPLESLA 99


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,620
Number of Sequences: 336
Number of extensions: 4219
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)