Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0400
(728 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0409 - 17710118-17710624,17711003-17711701,17711828-17712121 47 2e-05
10_08_0404 + 17653942-17654877,17656616-17657137 40 0.002
03_06_0433 + 33884858-33884926,33885027-33885263 32 0.54
10_03_0016 - 7099862-7099967,7100059-7100357,7101862-7102171,710... 31 0.71
12_02_1071 + 25824311-25824460,25824774-25824857,25825168-258252... 31 1.2
11_06_0763 - 27101764-27104017,27104523-27105055,27106403-27106993 31 1.2
10_07_0138 + 13325418-13325954 30 1.6
02_05_1147 - 34447519-34448042,34448126-34449092,34449458-344496... 30 1.6
10_08_0407 - 17699375-17699851,17700827-17701009,17702292-17702594 30 2.2
05_07_0045 - 27304696-27305299,27305392-27305521,27305625-27305760 29 5.0
03_05_0877 + 28443481-28443538,28443641-28443911,28444028-284442... 29 5.0
02_05_0491 + 29470575-29471351,29471574-29471806,29472697-294728... 29 5.0
11_06_0513 + 24466131-24469487 28 6.6
10_01_0222 - 2387703-2387744,2387797-2388119,2388170-2388251 28 6.6
02_01_0091 + 646299-649082 28 6.6
04_03_0901 + 20699814-20701169 28 8.7
>10_08_0409 - 17710118-17710624,17711003-17711701,17711828-17712121
Length = 499
Score = 46.8 bits (106), Expect = 2e-05
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Frame = +2
Query: 317 IKMTVLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKDVY 496
+K V +EG R + ++T+EE+++ +F V + D+ + G+ I + +K +
Sbjct: 116 VKQLVKGVIEGETRVLAASMTMEEIFQGTKKFKQEVFDQVQLDLNKFGLYIYNANVKQLV 175
Query: 497 DDV--QYLASLGK--SQTANVKRDADVGVALANRDAGIREAECEKNAMDVKYSMDTKI 658
D+ +Y + LGK Q A K DV + G +E E K +TK+
Sbjct: 176 DEPGHEYFSYLGKKTQQEAANKAKVDVAEERMKGEVGAKEREGLTRQNAAKVDAETKV 233
>10_08_0404 + 17653942-17654877,17656616-17657137
Length = 485
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 4/123 (3%)
Frame = +2
Query: 302 KTVKEIKMTVLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFT 481
K + V +EG R + ++T+EE+++ F V E ++ + G+ I +
Sbjct: 92 KLSHHVNELVKGVIEGETRVLAASMTMEEIFQGTKSFKQAVFENVQLELNQFGLIIYNAN 151
Query: 482 IKDVYDDV--QYLASLGKSQTANVKRDADVGVALANR--DAGIREAECEKNAMDVKYSMD 649
+K + D +Y + LG+ A V VA A + G +E + K +
Sbjct: 152 VKQLVDVAGHEYFSYLGQKTQQEAVNQAKVDVAEARMKGEVGAKERDGMTRQNAAKVDAE 211
Query: 650 TKI 658
TK+
Sbjct: 212 TKV 214
>03_06_0433 + 33884858-33884926,33885027-33885263
Length = 101
Score = 31.9 bits (69), Expect = 0.54
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -3
Query: 234 PVTVSGTPWAVSTYSHIGFNVITSRDIRWTSVTRHQAHAHPP 109
P VSGT V T F+ +TS +RWT T+H + P
Sbjct: 24 PKWVSGTTRRVYTQFVADFDQLTSNRVRWTPYTQHDDNDRAP 65
>10_03_0016 -
7099862-7099967,7100059-7100357,7101862-7102171,
7104402-7105054,7105266-7105554,7106549-7106634
Length = 580
Score = 31.5 bits (68), Expect = 0.71
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 225 VSGTPWAVSTYSHIGFNVITSRDIRWTSVTRHQAHAHPP 109
VSGT V T F+ + +RWTS T+H + H P
Sbjct: 450 VSGTTRRVYTQFVADFDQLMPDRVRWTSYTQHDVNDHAP 488
>12_02_1071 +
25824311-25824460,25824774-25824857,25825168-25825246,
25825334-25825428,25825940-25826067,25826160-25826393,
25826509-25826683,25826716-25826748,25827292-25827375,
25827929-25828169,25828275-25828453,25828800-25828873,
25830800-25830950,25831178-25831252,25831748-25831778,
25832107-25832339
Length = 681
Score = 30.7 bits (66), Expect = 1.2
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Frame = +2
Query: 248 KIMNEDELLTTACEQFLGKTVKEIKMTVLQTLE-GHL-RAILGTLTV-EEVYKDRDQFAG 418
+IM +D+ L T F KE+ + L L G + A+ G V +++Y D+ Q
Sbjct: 406 QIMTKDDPLPTGPNNF-----KEVHVDFLPELSTGFVDSAVSGAAVVPDDIYLDKSQKFT 460
Query: 419 LVREVAAPDVGRMGIEIL-SFTIKDVYDDVQ 508
L ++ +GR+G + + + ++ +++ DVQ
Sbjct: 461 LFKDFTVSGLGRLGCDFVENVSLLEIWKDVQ 491
>11_06_0763 - 27101764-27104017,27104523-27105055,27106403-27106993
Length = 1125
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 125 AWCLVTDVQRISLEVMTLNPMCEYVETAQGVPLTVTGVA 241
AW L V R S+ M +NP + V+ G+PL + V+
Sbjct: 438 AWLLCDKVARKSVTCMNINPCYDIVDMCYGMPLALIRVS 476
>10_07_0138 + 13325418-13325954
Length = 178
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 384 KRCTKTGTNSRAWYAKWLRRTSEEWESRFCPSRLR 488
+RC++ SR W ++ RR W R C R R
Sbjct: 85 RRCSRRWRRSRRWRSRCSRRWRRSWRRRRCSRRWR 119
>02_05_1147 -
34447519-34448042,34448126-34449092,34449458-34449657,
34449867-34450051,34450130-34450228,34450316-34450357,
34450516-34450860,34450956-34451101,34451213-34451296,
34451424-34451502,34451596-34451675,34451824-34451875,
34451992-34452026
Length = 945
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +2
Query: 500 DVQYLASLGKSQTANVKRDADVGVALANRDAGIREAECEKNAMDVKY 640
D QY+ S G+ Q +NV+R + V+L N I+E + A KY
Sbjct: 114 DFQYIDSSGRDQGSNVRRKSQSLVSLVNDKERIQEVRQKALATRDKY 160
>10_08_0407 - 17699375-17699851,17700827-17701009,17702292-17702594
Length = 320
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/69 (20%), Positives = 34/69 (49%)
Frame = +2
Query: 284 CEQFLGKTVKEIKMTVLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGI 463
C++ ++ + V +EG R + ++T+EE+++ +F V + + +G+
Sbjct: 97 CDEEAIRSPNHVIDLVKGVIEGETRVLASSMTMEEIFQGTKKFKQQVFDQVQLALNELGL 156
Query: 464 EILSFTIKD 490
I S ++D
Sbjct: 157 YIYSANVQD 165
>05_07_0045 - 27304696-27305299,27305392-27305521,27305625-27305760
Length = 289
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 588 SRLARATPTSASLFTLAVCDFPKLARYWTSS 496
S A A P S + L+ C FP +A W +S
Sbjct: 244 SGFAGAAPDSKATLELSACYFPNMAEMWAAS 274
>03_05_0877 +
28443481-28443538,28443641-28443911,28444028-28444242,
28444329-28445057,28445143-28445297,28445384-28445965
Length = 669
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +1
Query: 379 SRRGVQRQGPIRG--LGTRSGCAGRRKNGNRDSVLHD*G 489
++ G + +GP+ G LGT C G +NG+ D V +D G
Sbjct: 29 AKGGRKTKGPVIGIDLGTTYSCVGVYRNGHVDIVANDQG 67
>02_05_0491 +
29470575-29471351,29471574-29471806,29472697-29472856,
29473149-29473394,29473492-29473628,29473874-29474207,
29474283-29474444,29474717-29474791,29474866-29474966,
29475042-29475111,29475210-29475266,29475357-29475418,
29475505-29475577,29475663-29475884
Length = 902
Score = 28.7 bits (61), Expect = 5.0
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +2
Query: 503 VQYLASLGKSQTANVKRDADVGV-ALANRDAGIRE-AECEKNAMDVKYSMDTKIEDNTRL 676
V+ +A G + + +A + AL +DA R AE + N YSM K+E+NT +
Sbjct: 631 VEKMAGAGSILSKELYSEAKTRLEALDKKDAERRRTAELKNNLESYIYSMKEKLEENTEI 690
Query: 677 FKLQKAQ 697
+ Q
Sbjct: 691 LTVSTEQ 697
>11_06_0513 + 24466131-24469487
Length = 1118
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = -2
Query: 472 QNLDSHSSDVRRSHFAYQARE--LVPVFVHLFYCKSSENSSQMTLQRLQDSHLNLFDGLA 299
Q LDS+S+ RRS F ++ R L+ + + + S SS + ++L L L +A
Sbjct: 79 QALDSYSASARRSPFMHRVRSVALMGMAAYGVFAFLSARSSSLLQEKLLPQPLELRPKIA 138
Query: 298 QEL 290
++L
Sbjct: 139 RKL 141
>10_01_0222 - 2387703-2387744,2387797-2388119,2388170-2388251
Length = 148
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 449 GRMGIEILSFTIKDVYDDVQYLASLGKSQTANVKRDADVGVAL 577
G MG I F+IKD+Y+D + + S ++ D ++ V L
Sbjct: 10 GMMGPIIKVFSIKDIYEDAKSIISPSSYSDSDSNSDDEMEVVL 52
>02_01_0091 + 646299-649082
Length = 927
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +2
Query: 284 CEQFLGKTVKEIKMTVLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGI 463
CEQ L +T + +K T + + G + + + D F G++R VAA + +GI
Sbjct: 437 CEQVLMQTRQILKETAAELVNSICVYRGGYVASDRRKIEADLFGGILRGVAATNALELGI 496
Query: 464 EI 469
++
Sbjct: 497 DV 498
>04_03_0901 + 20699814-20701169
Length = 451
Score = 27.9 bits (59), Expect = 8.7
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Frame = +2
Query: 413 AGLVREVAAPDVGRMGI--EILSFTIKDVYDDVQYLASLGKSQTANVKRDADVGVALANR 586
AGLVR+VA+PD ++ ++ D D+ + A +G A A V R
Sbjct: 121 AGLVRQVASPDADPSAALRQLAAYLSDDDVDEFEKNALVGAGGAAEAV--ASVLRRKGER 178
Query: 587 DAGIREAECEKNAMDVKYSMDTKIEDNTR 673
+ G+ E + +MD + N R
Sbjct: 179 EVGVEGCEAAVRVLAAVVAMDGVEDANKR 207
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,102,385
Number of Sequences: 37544
Number of extensions: 528893
Number of successful extensions: 1741
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1741
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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