Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0400
         (728 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY344830-1|AAR05801.1|  334|Anopheles gambiae ICHIT protein.           25   2.4  
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    24   5.5  
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    24   5.5  
AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase pr...    23   7.3  
AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    23   9.7  

>AY344830-1|AAR05801.1|  334|Anopheles gambiae ICHIT protein.
          Length = 334

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 19/71 (26%), Positives = 26/71 (36%)
 Frame = -3

Query: 237 TPVTVSGTPWAVSTYSHIGFNVITSRDIRWTSVTRHQAHAHPPTMVRFVVGPKQPPETIS 58
           T  T +  P   +T+S +     T+    W   T       PPT   +   P  PP T +
Sbjct: 193 TATTTTHAPTTTTTWSDLPPPPPTTTTTVWIDPTATTTTHVPPTTTTWSDLPPPPPTTTT 252

Query: 57  ASLGPTVWMLP 25
                TVW  P
Sbjct: 253 T----TVWTDP 259


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskeletal
            structural protein protein.
          Length = 1645

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 84   PKQPPETISASLGPTVWMLPILNPFTVT 1
            P QPPET++ +    + + P + P T T
Sbjct: 1471 PVQPPETLTPAGSVAITVEPSVPPATTT 1498


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 450 PTSGAATSRTKPANWSLSLYTSSTVRVPRIAR 355
           P +   +  T+P +W  S  TS   R+PR  R
Sbjct: 274 PPARRRSRSTRPTSWPRSRPTSKPKRLPRRRR 305


>AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase
            protein.
          Length = 1253

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +1

Query: 295  PGQDRQRD*DDCPANVGGSFASYSRNSYSRRGVQRQGPIRGLG 423
            PGQ            +GG  A+  R+S +  G  RQ    GLG
Sbjct: 1154 PGQQPSPGSRSYNGQMGGGGANRKRSSATNNGGGRQSSNNGLG 1196


>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 23.0 bits (47), Expect = 9.7
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = +2

Query: 224 TVTGVAQCKIMNEDELLTTACEQFLGKTVKEIKMTVLQTLE 346
           ++ G+A CK   +   +     + L K +   K  + QT E
Sbjct: 10  SIHGIASCKRHRDPNAIQRVAREGLAKGISIKKCDIFQTCE 50


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 827,241
Number of Sequences: 2352
Number of extensions: 20270
Number of successful extensions: 38
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74428737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)