Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0400
(728 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006638-4|AAP82654.1| 312|Caenorhabditis elegans Stomatin prot... 37 0.017
AC006638-3|AAK85483.1| 367|Caenorhabditis elegans Stomatin prot... 37 0.017
U39646-5|AAK72057.1| 678|Caenorhabditis elegans Hypothetical pr... 34 0.091
Z81072-4|CAB03018.2| 327|Caenorhabditis elegans Hypothetical pr... 32 0.37
U40409-9|AAA81390.3| 314|Caenorhabditis elegans Stomatin protei... 32 0.48
U20555-1|AAC46918.1| 839|Caenorhabditis elegans zinc finger pro... 32 0.48
L23645-6|AAO91714.1| 635|Caenorhabditis elegans Zinc finger pro... 32 0.48
L23645-4|AAK26137.1| 867|Caenorhabditis elegans Zinc finger pro... 32 0.48
U41021-3|AAV28352.1| 317|Caenorhabditis elegans Mechanosensory ... 31 0.84
U41021-2|AAM54192.1| 392|Caenorhabditis elegans Mechanosensory ... 31 0.84
U41021-1|AAA82333.1| 481|Caenorhabditis elegans Mechanosensory ... 31 0.84
U26736-1|AAA87552.1| 481|Caenorhabditis elegans MEC-2 protein. 31 0.84
U26735-1|AAA87551.1| 481|Caenorhabditis elegans MEC-2 protein. 31 0.84
U29378-3|AAA68723.2| 330|Caenorhabditis elegans Stomatin protei... 29 3.4
U29378-2|ABS19471.1| 325|Caenorhabditis elegans Stomatin protei... 29 3.4
Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr... 29 4.5
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein. 29 4.5
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein. 29 4.5
AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical ... 29 4.5
AL023847-1|CAA19545.1| 364|Caenorhabditis elegans Hypothetical ... 28 5.9
AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical ... 28 5.9
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p... 28 7.9
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr... 28 7.9
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like... 28 7.9
>AC006638-4|AAP82654.1| 312|Caenorhabditis elegans Stomatin protein
5, isoform b protein.
Length = 312
Score = 36.7 bits (81), Expect = 0.017
Identities = 22/80 (27%), Positives = 37/80 (46%)
Frame = +2
Query: 353 LRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKDVYDDVQYLASLGKS 532
LR +LGT T+ E+ +RD A + +V G+++ IKD+ Q + S+
Sbjct: 231 LRNVLGTKTLSEMLSERDAIASISEKVLDEGTDPWGVKVERVEIKDIRLPHQLMRSMAAK 290
Query: 533 QTANVKRDADVGVALANRDA 592
A + A + A +DA
Sbjct: 291 AEAVRRARAAIIAAQGEKDA 310
>AC006638-3|AAK85483.1| 367|Caenorhabditis elegans Stomatin protein
5, isoform a protein.
Length = 367
Score = 36.7 bits (81), Expect = 0.017
Identities = 22/80 (27%), Positives = 37/80 (46%)
Frame = +2
Query: 353 LRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKDVYDDVQYLASLGKS 532
LR +LGT T+ E+ +RD A + +V G+++ IKD+ Q + S+
Sbjct: 231 LRNVLGTKTLSEMLSERDAIASISEKVLDEGTDPWGVKVERVEIKDIRLPHQLMRSMAAK 290
Query: 533 QTANVKRDADVGVALANRDA 592
A + A + A +DA
Sbjct: 291 AEAVRRARAAIIAAQGEKDA 310
>U39646-5|AAK72057.1| 678|Caenorhabditis elegans Hypothetical
protein F47B7.2b protein.
Length = 678
Score = 34.3 bits (75), Expect = 0.091
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Frame = -2
Query: 592 SISVSQSYTNVSVPLHVGRLRLPQAGQILDIVVDVL-NREGQNLDSHSS--DVRRSHFAY 422
++S Q + N +H G++ +A + V+D R +++D + D RSH+ +
Sbjct: 570 TLSAGQRHLNPKFQVHAGKVDQLEANDKVKNVLDASPQRTWKDIDGYDGLPDSGRSHYYF 629
Query: 421 QARELVPVFVHLFYCKSSENSSQ 353
L+ V + + YCK +N S+
Sbjct: 630 IFLSLIGVALIVIYCKYRKNRSK 652
>Z81072-4|CAB03018.2| 327|Caenorhabditis elegans Hypothetical
protein F30A10.5 protein.
Length = 327
Score = 32.3 bits (70), Expect = 0.37
Identities = 29/141 (20%), Positives = 62/141 (43%)
Frame = +2
Query: 203 TAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEIKMTVLQTLEGHLRAILGTLTV 382
T V L + GV ++ + + AC+ G V + + V Q + +R+ +G + +
Sbjct: 93 TIDNVQLRLDGVLYLRVFDPYK----ACDASYG--VDDPEFAVTQLAQTTMRSEVGKINL 146
Query: 383 EEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKDVYDDVQYLASLGKSQTANVKRDAD 562
+ V+K+R+ + GI+ + + I+D+ + ++ A K+ A
Sbjct: 147 DTVFKERELLNENIVFAINKASAPWGIQCMRYEIRDMQMPSKIQEAMQMQVEAERKKRAA 206
Query: 563 VGVALANRDAGIREAECEKNA 625
+ + R+A I AE +K +
Sbjct: 207 ILESEGIREAAINRAEGDKKS 227
>U40409-9|AAA81390.3| 314|Caenorhabditis elegans Stomatin protein 2
protein.
Length = 314
Score = 31.9 bits (69), Expect = 0.48
Identities = 21/80 (26%), Positives = 36/80 (45%)
Frame = +2
Query: 353 LRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKDVYDDVQYLASLGKS 532
LR +LGT ++ E+ DR+ A ++ + GI++ IKDV +Q ++
Sbjct: 190 LRNMLGTRSLSEILSDRETLAASMQTILDEATESWGIKVERVEIKDVRLPIQLQRAMAAE 249
Query: 533 QTANVKRDADVGVALANRDA 592
A + A V A + A
Sbjct: 250 AEATREARAKVIAAEGEQKA 269
>U20555-1|AAC46918.1| 839|Caenorhabditis elegans zinc finger
protein protein.
Length = 839
Score = 31.9 bits (69), Expect = 0.48
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = -3
Query: 438 AATSRTKPANWSLSLYTSSTVRVPRIARK*PSNVCRTVIL-ISLTVLPRNCSQAVVRSSS 262
A TS PAN S SL+ +RK PSN+ TV L + T L + + +
Sbjct: 700 APTSVPLPANHSSSLFEDIKAPKATYSRKTPSNIPLTVPLSTAATALTTTTAASSGAPVN 759
Query: 261 SFMILHWATPVTVSGTPWAVS 199
S + H ATP T +G P A +
Sbjct: 760 SNIQNHRATPST-AGAPMAAT 779
>L23645-6|AAO91714.1| 635|Caenorhabditis elegans Zinc finger
protein protein 1,isoform c protein.
Length = 635
Score = 31.9 bits (69), Expect = 0.48
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = -3
Query: 438 AATSRTKPANWSLSLYTSSTVRVPRIARK*PSNVCRTVIL-ISLTVLPRNCSQAVVRSSS 262
A TS PAN S SL+ +RK PSN+ TV L + T L + + +
Sbjct: 468 APTSVPLPANHSSSLFEDIKAPKATYSRKTPSNIPLTVPLSTAATALTTTTAASSGAPVN 527
Query: 261 SFMILHWATPVTVSGTPWAVS 199
S + H ATP T +G P A +
Sbjct: 528 SNIQNHRATPST-AGAPMAAT 547
>L23645-4|AAK26137.1| 867|Caenorhabditis elegans Zinc finger
protein protein 1,isoform a protein.
Length = 867
Score = 31.9 bits (69), Expect = 0.48
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = -3
Query: 438 AATSRTKPANWSLSLYTSSTVRVPRIARK*PSNVCRTVIL-ISLTVLPRNCSQAVVRSSS 262
A TS PAN S SL+ +RK PSN+ TV L + T L + + +
Sbjct: 700 APTSVPLPANHSSSLFEDIKAPKATYSRKTPSNIPLTVPLSTAATALTTTTAASSGAPVN 759
Query: 261 SFMILHWATPVTVSGTPWAVS 199
S + H ATP T +G P A +
Sbjct: 760 SNIQNHRATPST-AGAPMAAT 779
>U41021-3|AAV28352.1| 317|Caenorhabditis elegans Mechanosensory
abnormality protein2, isoform c protein.
Length = 317
Score = 31.1 bits (67), Expect = 0.84
Identities = 34/154 (22%), Positives = 64/154 (41%)
Frame = +2
Query: 131 CLVTDVQRISLEVMTLNPMCEYVETAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKTV 310
C+ T +++ L V++ + + + V + V V +I N +T + ++
Sbjct: 99 CIDT-YRKVDLRVLSFEVPPQEILSKDSVTVAVDAVVYFRISNATISVTNV--EDAARST 155
Query: 311 KEIKMTVLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKD 490
K + T L R ILGT T+ E+ DR+ + ++ G+++ +KD
Sbjct: 156 KLLAQTTL-------RNILGTKTLAEMLSDREAISHQMQTTLDEATEPWGVKVERVEVKD 208
Query: 491 VYDDVQYLASLGKSQTANVKRDADVGVALANRDA 592
V VQ ++ A + A V VA + A
Sbjct: 209 VRLPVQLQRAMAAEAEAAREARAKVIVAEGEQKA 242
>U41021-2|AAM54192.1| 392|Caenorhabditis elegans Mechanosensory
abnormality protein2, isoform b protein.
Length = 392
Score = 31.1 bits (67), Expect = 0.84
Identities = 34/154 (22%), Positives = 64/154 (41%)
Frame = +2
Query: 131 CLVTDVQRISLEVMTLNPMCEYVETAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKTV 310
C+ T +++ L V++ + + + V + V V +I N +T + ++
Sbjct: 174 CIDT-YRKVDLRVLSFEVPPQEILSKDSVTVAVDAVVYFRISNATISVTNV--EDAARST 230
Query: 311 KEIKMTVLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKD 490
K + T L R ILGT T+ E+ DR+ + ++ G+++ +KD
Sbjct: 231 KLLAQTTL-------RNILGTKTLAEMLSDREAISHQMQTTLDEATEPWGVKVERVEVKD 283
Query: 491 VYDDVQYLASLGKSQTANVKRDADVGVALANRDA 592
V VQ ++ A + A V VA + A
Sbjct: 284 VRLPVQLQRAMAAEAEAAREARAKVIVAEGEQKA 317
>U41021-1|AAA82333.1| 481|Caenorhabditis elegans Mechanosensory
abnormality protein2, isoform a protein.
Length = 481
Score = 31.1 bits (67), Expect = 0.84
Identities = 34/154 (22%), Positives = 64/154 (41%)
Frame = +2
Query: 131 CLVTDVQRISLEVMTLNPMCEYVETAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKTV 310
C+ T +++ L V++ + + + V + V V +I N +T + ++
Sbjct: 174 CIDT-YRKVDLRVLSFEVPPQEILSKDSVTVAVDAVVYFRISNATISVTNV--EDAARST 230
Query: 311 KEIKMTVLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKD 490
K + T L R ILGT T+ E+ DR+ + ++ G+++ +KD
Sbjct: 231 KLLAQTTL-------RNILGTKTLAEMLSDREAISHQMQTTLDEATEPWGVKVERVEVKD 283
Query: 491 VYDDVQYLASLGKSQTANVKRDADVGVALANRDA 592
V VQ ++ A + A V VA + A
Sbjct: 284 VRLPVQLQRAMAAEAEAAREARAKVIVAEGEQKA 317
>U26736-1|AAA87552.1| 481|Caenorhabditis elegans MEC-2 protein.
Length = 481
Score = 31.1 bits (67), Expect = 0.84
Identities = 34/154 (22%), Positives = 64/154 (41%)
Frame = +2
Query: 131 CLVTDVQRISLEVMTLNPMCEYVETAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKTV 310
C+ T +++ L V++ + + + V + V V +I N +T + ++
Sbjct: 174 CIDT-YRKVDLRVLSFEVPPQEILSKDSVTVAVDAVVYFRISNATISVTNV--EDAARST 230
Query: 311 KEIKMTVLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKD 490
K + T L R ILGT T+ E+ DR+ + ++ G+++ +KD
Sbjct: 231 KLLAQTTL-------RNILGTKTLAEMLSDREAISHQMQTTLDEATEPWGVKVERVEVKD 283
Query: 491 VYDDVQYLASLGKSQTANVKRDADVGVALANRDA 592
V VQ ++ A + A V VA + A
Sbjct: 284 VRLPVQLQRAMAAEAEAAREARAKVIVAEGEQKA 317
>U26735-1|AAA87551.1| 481|Caenorhabditis elegans MEC-2 protein.
Length = 481
Score = 31.1 bits (67), Expect = 0.84
Identities = 34/154 (22%), Positives = 64/154 (41%)
Frame = +2
Query: 131 CLVTDVQRISLEVMTLNPMCEYVETAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKTV 310
C+ T +++ L V++ + + + V + V V +I N +T + ++
Sbjct: 174 CIDT-YRKVDLRVLSFEVPPQEILSKDSVTVAVDAVVYFRISNATISVTNV--EDAARST 230
Query: 311 KEIKMTVLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKD 490
K + T L R ILGT T+ E+ DR+ + ++ G+++ +KD
Sbjct: 231 KLLAQTTL-------RNILGTKTLAEMLSDREAISHQMQTTLDEATEPWGVKVERVEVKD 283
Query: 491 VYDDVQYLASLGKSQTANVKRDADVGVALANRDA 592
V VQ ++ A + A V VA + A
Sbjct: 284 VRLPVQLQRAMAAEAEAAREARAKVIVAEGEQKA 317
>U29378-3|AAA68723.2| 330|Caenorhabditis elegans Stomatin protein
1, isoform a protein.
Length = 330
Score = 29.1 bits (62), Expect = 3.4
Identities = 30/149 (20%), Positives = 62/149 (41%)
Frame = +2
Query: 155 ISLEVMTLNPMCEYVETAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEIKMTVL 334
I L V + N + + + V ++V V K+ + +T+ +G K+
Sbjct: 103 IDLRVASYNVPSQEILSRDSVTVSVDAVVYFKVFDP---ITSVVG--VGNATDSTKLLAQ 157
Query: 335 QTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKDVYDDVQYL 514
TL R ILGT T+ E+ DR++ + ++ GI++ ++ DV+
Sbjct: 158 TTL----RTILGTHTLSEILSDREKISADMKISLDEATEPWGIKVERVELR----DVRLP 209
Query: 515 ASLGKSQTANVKRDADVGVALANRDAGIR 601
+ + ++ A + D G + + +R
Sbjct: 210 SQMQRAMAAEAEATRDAGAKIIAAEGELR 238
>U29378-2|ABS19471.1| 325|Caenorhabditis elegans Stomatin protein
1, isoform b protein.
Length = 325
Score = 29.1 bits (62), Expect = 3.4
Identities = 30/149 (20%), Positives = 62/149 (41%)
Frame = +2
Query: 155 ISLEVMTLNPMCEYVETAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEIKMTVL 334
I L V + N + + + V ++V V K+ + +T+ +G K+
Sbjct: 103 IDLRVASYNVPSQEILSRDSVTVSVDAVVYFKVFDP---ITSVVG--VGNATDSTKLLAQ 157
Query: 335 QTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKDVYDDVQYL 514
TL R ILGT T+ E+ DR++ + ++ GI++ ++ DV+
Sbjct: 158 TTL----RTILGTHTLSEILSDREKISADMKISLDEATEPWGIKVERVELR----DVRLP 209
Query: 515 ASLGKSQTANVKRDADVGVALANRDAGIR 601
+ + ++ A + D G + + +R
Sbjct: 210 SQMQRAMAAEAEATRDAGAKIIAAEGELR 238
>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical
protein C12C8.3b protein.
Length = 1143
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 218 PLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEI---KMTVLQTLEGHLRAILGT 373
PL VA +++NE +LL CE+ G T+K+I +T T E +RA T
Sbjct: 511 PLGDIRVAVGEVVNESQLLQWQCEK-TGDTIKQIIDGIVTNATTAENEIRAAFDT 564
>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical
protein C12C8.3a protein.
Length = 1147
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 218 PLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEI---KMTVLQTLEGHLRAILGT 373
PL VA +++NE +LL CE+ G T+K+I +T T E +RA T
Sbjct: 515 PLGDIRVAVGEVVNESQLLQWQCEK-TGDTIKQIIDGIVTNATTAENEIRAAFDT 568
>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
Length = 1147
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 218 PLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEI---KMTVLQTLEGHLRAILGT 373
PL VA +++NE +LL CE+ G T+K+I +T T E +RA T
Sbjct: 515 PLGDIRVAVGEVVNESQLLQWQCEK-TGDTIKQIIDGIVTNATTAENEIRAAFDT 568
>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
Length = 1143
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 218 PLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEI---KMTVLQTLEGHLRAILGT 373
PL VA +++NE +LL CE+ G T+K+I +T T E +RA T
Sbjct: 511 PLGDIRVAVGEVVNESQLLQWQCEK-TGDTIKQIIDGIVTNATTAENEIRAAFDT 564
>AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical
protein H20J04.4a protein.
Length = 488
Score = 28.7 bits (61), Expect = 4.5
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Frame = +2
Query: 14 GFKMGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWAWCLVTDVQRISLEVMTLNPMCE 193
GF++G++H+ P + + + F T + I+ + L D+ + L V P C
Sbjct: 361 GFRVGSLHSQIPQKQRLAALSAFRSKTLQVIICTDVASRGL--DIPHVDLVVNHNVPQCP 418
Query: 194 --YVE-TAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEIKMTV 331
Y+ + G A + D L A EQ +GK + E+K+ +
Sbjct: 419 KTYIHRVGRSARAGRFGSALSFVTQYDVELLQAVEQVIGKKLDELKVKI 467
>AL023847-1|CAA19545.1| 364|Caenorhabditis elegans Hypothetical
protein Y57A10C.3 protein.
Length = 364
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -3
Query: 285 QAVVRSSSSFMILHWATPVTVSGTPWAVS-TYSHIGFNVITSRDIRWTSVTRH 130
Q + + S + H T +T++GT W VS S I F ++ ++RW + H
Sbjct: 178 QIIAITCSCLALFHKFTIITINGT-WIVSCACSSIVFFLVERINLRWKAEMEH 229
>AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical
protein H20J04.4b protein.
Length = 561
Score = 28.3 bits (60), Expect = 5.9
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 3/108 (2%)
Frame = +2
Query: 14 GFKMGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWAWCLVTDVQRISLEVMTLNPMCE 193
GF++G++H+ P + + + F T + I+ + L D+ + L V P C
Sbjct: 361 GFRVGSLHSQIPQKQRLAALSAFRSKTLQVIICTDVASRGL--DIPHVDLVVNHNVPQCP 418
Query: 194 --YVE-TAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEIKMT 328
Y+ + G A + D L A EQ +GK + E+K++
Sbjct: 419 KTYIHRVGRSARAGRFGSALSFVTQYDVELLQAVEQVIGKKLDELKVS 466
>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical protein
F15B9.7 protein.
Length = 2577
Score = 27.9 bits (59), Expect = 7.9
Identities = 39/135 (28%), Positives = 56/135 (41%), Gaps = 16/135 (11%)
Frame = +2
Query: 368 GTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEI---LSFTIKDVYDDVQ---------Y 511
GTL V DR+QFA +V + A D G + ++ T+ DV D+ Y
Sbjct: 842 GTLRVSSKL-DREQFAVIVLPIFARDRGTPSLSAASEITLTLSDVNDNAPTFEQLSYDLY 900
Query: 512 LAS---LGKSQTANVKRDADVGVALANRDAGIREAECEKNAMDVK-YSMDTKIEDNTRLF 679
+A +G + V RDAD G N D R D K + ++ E N +
Sbjct: 901 IAENSPVGSTVGTIVARDADEG---DNADISFRIF----GGADAKLFDIEEDAEQNGVVR 953
Query: 680 KLQKAQFDQEINTAK 724
L +A+FD E K
Sbjct: 954 ILTRAEFDYEAKANK 968
>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
protein F15B9.7 protein.
Length = 2577
Score = 27.9 bits (59), Expect = 7.9
Identities = 39/135 (28%), Positives = 56/135 (41%), Gaps = 16/135 (11%)
Frame = +2
Query: 368 GTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEI---LSFTIKDVYDDVQ---------Y 511
GTL V DR+QFA +V + A D G + ++ T+ DV D+ Y
Sbjct: 842 GTLRVSSKL-DREQFAVIVLPIFARDRGTPSLSAASEITLTLSDVNDNAPTFEQLSYDLY 900
Query: 512 LAS---LGKSQTANVKRDADVGVALANRDAGIREAECEKNAMDVK-YSMDTKIEDNTRLF 679
+A +G + V RDAD G N D R D K + ++ E N +
Sbjct: 901 IAENSPVGSTVGTIVARDADEG---DNADISFRIF----GGADAKLFDIEEDAEQNGVVR 953
Query: 680 KLQKAQFDQEINTAK 724
L +A+FD E K
Sbjct: 954 ILTRAEFDYEAKANK 968
>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical protein
F30H5.3 protein.
Length = 1599
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +1
Query: 292 VPGQDRQRD*DDCPANVGGSFASYSRNSYSRRGVQRQGPIRGLGTRSGCA 441
V G +Q CP+ +F+ S+N Y G G G +GCA
Sbjct: 1419 VNGTPKQCTASPCPSGYKCTFSKKSKNYYCCSSKASPGSSSGSGAANGCA 1468
>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
protein FMI-1 protein.
Length = 2596
Score = 27.9 bits (59), Expect = 7.9
Identities = 39/135 (28%), Positives = 56/135 (41%), Gaps = 16/135 (11%)
Frame = +2
Query: 368 GTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEI---LSFTIKDVYDDVQ---------Y 511
GTL V DR+QFA +V + A D G + ++ T+ DV D+ Y
Sbjct: 842 GTLRVSSKL-DREQFAVIVLPIFARDRGTPSLSAASEITLTLSDVNDNAPTFEQLSYDLY 900
Query: 512 LAS---LGKSQTANVKRDADVGVALANRDAGIREAECEKNAMDVK-YSMDTKIEDNTRLF 679
+A +G + V RDAD G N D R D K + ++ E N +
Sbjct: 901 IAENSPVGSTVGTIVARDADEG---DNADISFRIF----GGADAKLFDIEEDAEQNGVVR 953
Query: 680 KLQKAQFDQEINTAK 724
L +A+FD E K
Sbjct: 954 ILTRAEFDYEAKANK 968
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,990,192
Number of Sequences: 27780
Number of extensions: 414786
Number of successful extensions: 1303
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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