Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0400
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    29   0.045
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    24   1.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    24   1.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.2  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   5.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.0  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   9.0  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   9.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.0  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 29.1 bits (62), Expect = 0.045
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 349 SFASYSRNS-YSRRGVQRQGPIRGLGTRSGCAGRRKNG 459
           S+  YS NS   R  + + G + G G+  GC  R+K G
Sbjct: 140 SYDPYSPNSKIGRDELSQPGSLNGYGSSDGCDARKKKG 177


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 62  IVSGGCFGPTTKRTIVGGWAWAW 130
           IV+G    PT    + GG AW+W
Sbjct: 153 IVNGKRVPPTNWVGVFGGSAWSW 175


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 62  IVSGGCFGPTTKRTIVGGWAWAW 130
           IV+G    PT    + GG AW+W
Sbjct: 153 IVNGKRVPPTNWVGVFGGSAWSW 175


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 17/83 (20%), Positives = 29/83 (34%)
 Frame = -2

Query: 466  LDSHSSDVRRSHFAYQARELVPVFVHLFYCKSSENSSQMTLQRLQDSHLNLFDGLAQELL 287
            +D+H  DV+ S F +   +++          +     + T   L  +    FDG    L 
Sbjct: 1404 MDAHFKDVKLSDFGFSTEDILDTADEDLLINNVFYEDE-TSCMLDKTRAQTFDGKDYPLR 1462

Query: 286  AGSCEKFVFVHDLALGDSGHRER 218
             G C   V      +    H E+
Sbjct: 1463 LGPCWHAVMTTYPRINPDNHNEK 1485


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 84  PKQPPETISASLGPTVWMLPILNPF 10
           P +PP+ +  +L    W+   +NPF
Sbjct: 333 PVEPPDILMPALTWLGWINSAINPF 357


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -2

Query: 175 CHHFKGYTLDVRNQTPGPCP 116
           CH   GY  DV  Q    CP
Sbjct: 247 CHCKPGYQADVEKQECTECP 266


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -2

Query: 385 FYCKSSENSSQMTLQRL-QDSHLNLF 311
           + C+SS+NS    +QR     +LN++
Sbjct: 621 YMCQSSKNSENSIMQRASMKENLNVY 646


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 601 PNTSISVSQSYTNVSVP 551
           PNT+IS    Y N+ VP
Sbjct: 118 PNTNISEDCLYLNIWVP 134


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 570 TPTSASLFTLAVCDF 526
           TP++  +  LA+CDF
Sbjct: 81  TPSNMFVVNLAICDF 95


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 601 PNTSISVSQSYTNVSVP 551
           PNT+IS    Y N+ VP
Sbjct: 118 PNTNISEDCLYLNIWVP 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,466
Number of Sequences: 438
Number of extensions: 5762
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)