Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0399
         (637 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY137766-1|AAM94344.1|   78|Anopheles gambiae heat shock protein...    91   3e-20
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            24   3.5  
DQ137802-1|AAZ78363.1|  265|Anopheles gambiae female-specific do...    23   8.1  
DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific doub...    23   8.1  
AY903308-1|AAX48940.1|  241|Anopheles gambiae female-specific do...    23   8.1  
AY903307-1|AAX48939.1|  283|Anopheles gambiae male-specific doub...    23   8.1  

>AY137766-1|AAM94344.1|   78|Anopheles gambiae heat shock protein 70
           protein.
          Length = 78

 Score = 91.1 bits (216), Expect = 3e-20
 Identities = 42/47 (89%), Positives = 46/47 (97%)
 Frame = +3

Query: 483 NAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDK 623
           +AVITVPAYFNDSQRQATKDAG I+GLNV+RIINEPTAAA+AYGLDK
Sbjct: 1   DAVITVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAALAYGLDK 47


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 62   NGKSTRSRNRSGYHVLLRWCLPAREGGDHR--QRPG 163
            +GK  RS +   +++LL    P REG  H+  Q PG
Sbjct: 1802 DGKYKRSYSYEPHNLLLSNLFPPREGFHHKAVQLPG 1837


>DQ137802-1|AAZ78363.1|  265|Anopheles gambiae female-specific
           doublesex protein protein.
          Length = 265

 Score = 23.0 bits (47), Expect = 8.1
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +2

Query: 473 NCAECSYHGSRVLQ*LSKTSHKR-CRY 550
           NCA C  HG ++        HKR C+Y
Sbjct: 40  NCARCRNHGLKI----GLKGHKRYCKY 62


>DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific
           doublesex protein protein.
          Length = 622

 Score = 23.0 bits (47), Expect = 8.1
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +2

Query: 473 NCAECSYHGSRVLQ*LSKTSHKR-CRY 550
           NCA C  HG ++        HKR C+Y
Sbjct: 40  NCARCRNHGLKI----GLKGHKRYCKY 62


>AY903308-1|AAX48940.1|  241|Anopheles gambiae female-specific
           doublesex protein protein.
          Length = 241

 Score = 23.0 bits (47), Expect = 8.1
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +2

Query: 473 NCAECSYHGSRVLQ*LSKTSHKR-CRY 550
           NCA C  HG ++        HKR C+Y
Sbjct: 40  NCARCRNHGLKI----GLKGHKRYCKY 62


>AY903307-1|AAX48939.1|  283|Anopheles gambiae male-specific
           doublesex protein protein.
          Length = 283

 Score = 23.0 bits (47), Expect = 8.1
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +2

Query: 473 NCAECSYHGSRVLQ*LSKTSHKR-CRY 550
           NCA C  HG ++        HKR C+Y
Sbjct: 40  NCARCRNHGLKI----GLKGHKRYCKY 62


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 707,553
Number of Sequences: 2352
Number of extensions: 15312
Number of successful extensions: 26
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 62305095
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)