Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0398
         (659 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1 pro...    85   1e-18
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    23   6.5  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   8.5  
AF364130-1|AAL35506.1|  417|Anopheles gambiae putative odorant r...    23   8.5  
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    23   8.5  

>AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1
           protein protein.
          Length = 160

 Score = 85.4 bits (202), Expect = 1e-18
 Identities = 49/150 (32%), Positives = 82/150 (54%), Gaps = 4/150 (2%)
 Frame = +1

Query: 73  MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG 252
           MA+ L + +I + +  FS++D +G G +   +LG  +R+L  NPT  EL   +      G
Sbjct: 1   MANDLKDVEIEKAQFVFSVYDWEGSGQMDAMDLGNALRALNLNPT-IELIGKMGGTQKRG 59

Query: 253 NGTIDFPEFLTMMA--RKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLT 426
              I F EFL + +  +K K+    E+  E  +++DK+ +G +  AEL H +T LGE+L 
Sbjct: 60  EKKIKFEEFLPIFSQVKKEKEQGCFEDFLECLKLYDKNEDGTMLLAELTHSLTALGERLD 119

Query: 427 DEEVDEMIREA--DIDGDGQVNYEEFVTMM 510
           D E+D ++++     D DG + Y  F+  M
Sbjct: 120 DVELDNVMKDCMDPEDDDGNIPYAPFLKKM 149


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +1

Query: 352  DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQ 480
            D++GN      E     T +G +++  +VD  +RE +    GQ
Sbjct: 1061 DQEGNDMEREVETSDEFTGIGIRVSFTQVDAEMREMNQLSGGQ 1103


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 539  CVKSREFKYTFCFMTHNISIVLDLHFSS 622
            C +     Y F   T NIS + + H+SS
Sbjct: 3093 CYEQHGLSYVFPHNTSNISGITEDHYSS 3120


>AF364130-1|AAL35506.1|  417|Anopheles gambiae putative odorant
           receptor Or1 protein.
          Length = 417

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 291 HHCQELGKVYRAVSVRVYFIDHVLKFG 211
           HH +  G +Y  V+  V F   +L FG
Sbjct: 253 HHSKVYGTMYAKVTECVLFHKDILSFG 279


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 98  RSPSLRRHSHCSTKTAMAPSRPKS 169
           RSP  RR S  +  T+   SRP S
Sbjct: 272 RSPPARRRSRSTRPTSWPRSRPTS 295


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 570,508
Number of Sequences: 2352
Number of extensions: 10288
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 65650335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)