Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0398
         (659 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              26   0.28 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   2.0  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.9  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   7.9  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +1

Query: 121 FSLFDKDGDGTITTKELGTVMRS--LGQNPTEAELQDMINEVDADGNGTIDFPEF 279
           FS +D++ +G +  +EL     +  L +      L  MI+  D DG+G ++  EF
Sbjct: 242 FSHYDRNNNGNLEREELEQFAENEDLEELCRGCNLGHMISYDDTDGDGKLNVNEF 296


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -3

Query: 438 DLLVSEFLS--EVGHDVAQLGRGDEAVAVLVE 349
           DL  S+ L   E+ HDVA  G+G E V++ V+
Sbjct: 163 DLNTSQLLKQVEIPHDVATTGKG-ELVSLTVQ 193


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = +3

Query: 501 HHDDVEVSRRLVCV*KAENLNIHFVS*HTILA 596
           H    E     VC+   E + +HF + H  +A
Sbjct: 183 HQSGSEAEAEFVCIATPEAIELHFTTDHPSVA 214


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 328  FLPRYPCPSSCAP 290
            F P Y  P++CAP
Sbjct: 1803 FSPEYDDPANCAP 1815


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 322 PRYPCPSSCAPSLSRTRESLSCRFRP 245
           P  P P    P++ R R  L+ RF P
Sbjct: 372 PPTPFPRFIPPNVYRFRPPLNPRFEP 397


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,084
Number of Sequences: 438
Number of extensions: 2437
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)