Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0396
         (679 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   1.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   1.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   1.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   1.7  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    23   3.0  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   7.0  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   7.0  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   9.3  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   9.3  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 529 YPDSDFSDEDQSPL 570
           Y D +FSD++ SPL
Sbjct: 11  YSDDNFSDDESSPL 24


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 529 YPDSDFSDEDQSPL 570
           Y D +FSD++ SPL
Sbjct: 11  YSDDNFSDDESSPL 24


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 529 YPDSDFSDEDQSPL 570
           Y D +FSD++ SPL
Sbjct: 11  YSDDNFSDDESSPL 24


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 529 YPDSDFSDEDQSPL 570
           Y D +FSD++ SPL
Sbjct: 11  YSDDNFSDDESSPL 24


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 110 QRCTSGPGLTQ*KLWC 157
           QRC +G    + KLWC
Sbjct: 452 QRCNAGLVFDEEKLWC 467


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 335 SSIRSINGPQQGLRF 379
           + IR+I GP++ LRF
Sbjct: 278 TQIRNIRGPRKRLRF 292


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 452 VETFKCVNLLIS 417
           VE+F CVN L+S
Sbjct: 342 VESFVCVNTLVS 353


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 280 PTVQARLPTYRRAALAVLAITYNDTISNRCKER 182
           P V++   T R   ++ +   Y D ++ RC+ER
Sbjct: 737 PRVESFAETVR--TVSKIPPLYKDLVAKRCEER 767


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 322 TGPNCEKYSRSCRWPTVQARLPT 254
           TG NCE Y R       +A +PT
Sbjct: 448 TGKNCEIYDRGFPGGLGRAVVPT 470


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,220
Number of Sequences: 336
Number of extensions: 3070
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)