Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0396
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   4.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.2  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   8.2  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -1

Query: 355 VDRSNTTLALCTGPNCEKYSRSCRWPTVQAR 263
           V   NT    CT  + EKY   C    V+ +
Sbjct: 182 VSMENTENKSCTDSDIEKYKMFCNLENVKLK 212


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 559  QSPLDSLFNKAADHLRKVTNKLNNGQLLGVVPGCSSKVLK 678
            QSP      +    L KV    N+GQL+ V    + K LK
Sbjct: 1100 QSPHQQQQQQQQKILAKVLTSSNSGQLISVENLLAQKGLK 1139


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 189 LHLLEIVSL*VMASTARAARLYVGNLAWTVGHRQLREYFSQFGP 320
           +HL EI     +   A    LY+G L+  +  R+ RE+  +  P
Sbjct: 109 IHLKEIEDTEPILLIAYIYHLYMGLLSGGIILRKKREFMQKIWP 152


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,000
Number of Sequences: 438
Number of extensions: 3539
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)