Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0396
(679 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 66 2e-11
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 64 6e-11
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 64 6e-11
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 64 1e-10
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 64 1e-10
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 62 2e-10
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 62 2e-10
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 62 2e-10
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 61 6e-10
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 61 6e-10
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 61 6e-10
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 61 6e-10
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 61 8e-10
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 60 1e-09
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 60 1e-09
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 60 1e-09
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 60 2e-09
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 60 2e-09
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 60 2e-09
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 60 2e-09
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 59 2e-09
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 59 2e-09
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 59 3e-09
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 59 3e-09
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 59 3e-09
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 58 4e-09
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 58 4e-09
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 58 5e-09
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 58 5e-09
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 58 5e-09
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 57 9e-09
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 57 9e-09
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 57 9e-09
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 57 9e-09
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 57 9e-09
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 57 9e-09
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 57 9e-09
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 57 9e-09
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 57 9e-09
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 57 9e-09
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 57 9e-09
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 57 9e-09
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 57 1e-08
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 57 1e-08
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 56 2e-08
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 56 3e-08
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 56 3e-08
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 55 4e-08
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 55 4e-08
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 55 4e-08
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 55 4e-08
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 54 7e-08
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 54 9e-08
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 54 9e-08
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 53 2e-07
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 52 3e-07
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 52 3e-07
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 52 3e-07
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 52 3e-07
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 52 3e-07
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 52 3e-07
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 52 3e-07
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 52 3e-07
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 52 3e-07
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 52 4e-07
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 52 5e-07
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 52 5e-07
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 52 5e-07
At5g51300.2 68418.m06360 splicing factor-related contains simila... 51 6e-07
At5g51300.1 68418.m06359 splicing factor-related contains simila... 51 6e-07
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 51 6e-07
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 51 8e-07
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 50 1e-06
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 50 1e-06
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 50 1e-06
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 50 2e-06
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 50 2e-06
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 49 3e-06
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 49 3e-06
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 49 3e-06
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 49 3e-06
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 49 3e-06
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 48 4e-06
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 48 6e-06
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 48 6e-06
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 48 8e-06
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 48 8e-06
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 48 8e-06
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 47 1e-05
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 47 1e-05
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 47 1e-05
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 47 1e-05
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 47 1e-05
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 47 1e-05
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 47 1e-05
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 47 1e-05
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 47 1e-05
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 47 1e-05
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 46 2e-05
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 46 2e-05
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 46 2e-05
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 46 2e-05
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 46 2e-05
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 46 2e-05
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 46 2e-05
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 46 2e-05
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 46 3e-05
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 45 4e-05
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 45 4e-05
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 45 4e-05
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 45 4e-05
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 45 4e-05
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 45 5e-05
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 45 5e-05
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 44 9e-05
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 44 9e-05
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 44 9e-05
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 44 1e-04
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 43 2e-04
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 43 2e-04
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 43 2e-04
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 43 2e-04
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 43 2e-04
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 43 2e-04
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 42 4e-04
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 42 4e-04
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 42 5e-04
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 42 5e-04
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 42 5e-04
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 42 5e-04
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 41 7e-04
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 41 7e-04
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 41 9e-04
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 41 9e-04
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 41 9e-04
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 41 9e-04
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 41 9e-04
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 41 9e-04
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 40 0.001
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 40 0.001
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 40 0.001
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 40 0.001
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 40 0.001
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 40 0.002
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 39 0.003
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 39 0.003
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 39 0.003
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 39 0.003
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 39 0.003
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 39 0.003
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 39 0.003
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 39 0.003
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 39 0.003
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 39 0.003
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 39 0.003
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 38 0.005
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 38 0.005
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 38 0.006
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 38 0.008
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 37 0.011
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 37 0.011
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 37 0.014
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 37 0.014
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 37 0.014
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 37 0.014
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 37 0.014
At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) famil... 36 0.019
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 36 0.025
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 36 0.025
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 36 0.033
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 36 0.033
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 35 0.057
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 35 0.057
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 35 0.057
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 35 0.057
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 34 0.075
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 34 0.099
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 33 0.13
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 33 0.13
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 33 0.13
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 33 0.13
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 33 0.17
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 33 0.17
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 32 0.40
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 31 0.53
At1g79100.1 68414.m09223 arginine/serine-rich protein-related si... 31 0.53
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 31 0.70
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 31 0.93
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 31 0.93
At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) famil... 30 1.2
At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing ... 30 1.2
At5g66010.1 68418.m08312 heterogeneous nuclear ribonucleoprotein... 30 1.6
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil... 30 1.6
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ... 30 1.6
At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ... 30 1.6
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 29 2.1
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 29 2.1
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 29 2.8
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 29 2.8
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 29 3.7
At3g48840.1 68416.m05334 RNA recognition motif (RRM)-containing ... 29 3.7
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 28 4.9
At2g33440.1 68415.m04099 splicing factor family protein similar ... 28 4.9
At4g39290.1 68417.m05564 kelch repeat-containing F-box family pr... 28 6.5
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 66.5 bits (155), Expect = 2e-11
Identities = 33/72 (45%), Positives = 45/72 (62%)
Frame = +3
Query: 240 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 419
A R+YVGNL W V + +L + FS+ G V ARVV+DR TG S+G+GF+ + D
Sbjct: 243 AFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSD----VDEL 298
Query: 420 NKQIHTLEGFNL 455
N+ I L+G NL
Sbjct: 299 NEAISALDGQNL 310
Score = 53.6 bits (123), Expect = 1e-07
Identities = 25/61 (40%), Positives = 37/61 (60%)
Frame = +3
Query: 243 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATN 422
A+L+VGNLA+ V + L F Q G V+ A V+++R T S+G+GF+ +S A A
Sbjct: 150 AKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVE 209
Query: 423 K 425
K
Sbjct: 210 K 210
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 64.5 bits (150), Expect = 6e-11
Identities = 29/67 (43%), Positives = 39/67 (58%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
+++VG LAW LR YF QFG + A V+ D+S+G SKGYGF+ F P AA A
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 426 QIHTLEG 446
++G
Sbjct: 68 PAPVIDG 74
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 64.5 bits (150), Expect = 6e-11
Identities = 29/67 (43%), Positives = 39/67 (58%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
+++VG LAW LR YF QFG + A V+ D+S+G SKGYGF+ F P AA A
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 426 QIHTLEG 446
++G
Sbjct: 68 PAPVIDG 74
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 63.7 bits (148), Expect = 1e-10
Identities = 26/67 (38%), Positives = 44/67 (65%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
+L++G ++W +L+EYFS FG V A ++ DR+TG ++G+GF+ FA P A A+
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVIT 65
Query: 426 QIHTLEG 446
+ H ++G
Sbjct: 66 EKHNIDG 72
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/76 (31%), Positives = 37/76 (48%)
Frame = +3
Query: 237 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
R +++VG L +V + YF QFG V++D +T +G+GFI + S A
Sbjct: 106 RTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKV 165
Query: 417 TNKQIHTLEGFNLSVQ 464
K H L G + V+
Sbjct: 166 LLKTFHELNGKMVEVK 181
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 63.7 bits (148), Expect = 1e-10
Identities = 26/67 (38%), Positives = 44/67 (65%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
+L++G ++W +L+EYFS FG V A ++ DR+TG ++G+GF+ FA P A A+
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVIT 65
Query: 426 QIHTLEG 446
+ H ++G
Sbjct: 66 EKHNIDG 72
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/76 (31%), Positives = 37/76 (48%)
Frame = +3
Query: 237 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
R +++VG L +V + YF QFG V++D +T +G+GFI + S A
Sbjct: 106 RTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKV 165
Query: 417 TNKQIHTLEGFNLSVQ 464
K H L G + V+
Sbjct: 166 LLKTFHELNGKMVEVK 181
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 62.5 bits (145), Expect = 2e-10
Identities = 23/64 (35%), Positives = 43/64 (67%)
Frame = +3
Query: 225 ASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSA 404
+S + +++L++G L+W+V + L++ FS FG V R+ +D+ +G S+G+GF++FA
Sbjct: 35 SSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGD 94
Query: 405 AADA 416
A A
Sbjct: 95 ALSA 98
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 62.5 bits (145), Expect = 2e-10
Identities = 27/70 (38%), Positives = 39/70 (55%)
Frame = +3
Query: 237 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
+ +++VG LAW +R YF QFG + A V+ D++TG SKGYGF+ F AA A
Sbjct: 20 KLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRA 79
Query: 417 TNKQIHTLEG 446
++G
Sbjct: 80 CQNMNPVIDG 89
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 62.5 bits (145), Expect = 2e-10
Identities = 27/67 (40%), Positives = 40/67 (59%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
+++VG LAW LR++F Q+G + A V+ D++TG SKGYGF+ F P AA A
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
Query: 426 QIHTLEG 446
++G
Sbjct: 85 PTPIIDG 91
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 61.3 bits (142), Expect = 6e-10
Identities = 32/72 (44%), Positives = 43/72 (59%)
Frame = +3
Query: 240 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 419
A R+YVGNL W V +L FS+ G V ARVV DR TG S+G+GF++ ++ +
Sbjct: 206 AFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSN----ENEV 261
Query: 420 NKQIHTLEGFNL 455
N I L+G NL
Sbjct: 262 NVAIAALDGQNL 273
Score = 48.8 bits (111), Expect = 3e-06
Identities = 22/61 (36%), Positives = 36/61 (59%)
Frame = +3
Query: 243 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATN 422
A+L+VGNL + V + L F Q G V+ + V+++R T S+G+GF+ ++ A A
Sbjct: 113 AKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 172
Query: 423 K 425
K
Sbjct: 173 K 173
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 61.3 bits (142), Expect = 6e-10
Identities = 24/62 (38%), Positives = 41/62 (66%)
Frame = +3
Query: 222 MASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPS 401
M S + +L++G ++W +L+EYF ++G + A ++ DR+TG ++G+GFI FA PS
Sbjct: 8 MESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPS 67
Query: 402 AA 407
A
Sbjct: 68 VA 69
Score = 54.0 bits (124), Expect = 9e-08
Identities = 24/77 (31%), Positives = 41/77 (53%)
Frame = +3
Query: 234 ARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAAD 413
AR +++VG L ++ + + YF QFG + V++D +T +G+GFI F S +
Sbjct: 119 ARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDM 178
Query: 414 ATNKQIHTLEGFNLSVQ 464
+K H L G + V+
Sbjct: 179 VLHKTFHELNGKMVEVK 195
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 61.3 bits (142), Expect = 6e-10
Identities = 35/87 (40%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Frame = +3
Query: 222 MASTARAAR-LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASP 398
MAS++ R ++VGN+ + QLRE + GPV S R+V DR TG KGYGF E+
Sbjct: 1 MASSSSQRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDE 60
Query: 399 SAAADA-TNKQIHTLEGFNLSVQLQNN 476
A A N Q + + G L V N
Sbjct: 61 ETALSARRNLQSYEINGRQLRVDFAEN 87
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 61.3 bits (142), Expect = 6e-10
Identities = 26/57 (45%), Positives = 36/57 (63%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
+++VG LAW LR +F Q+G + A V+ D++TG SKGYGF+ F P AA A
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 81
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 60.9 bits (141), Expect = 8e-10
Identities = 28/72 (38%), Positives = 47/72 (65%)
Frame = +3
Query: 240 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 419
+++L++G +A+++ LRE F+++G V RV+ DR TG S+G+GF+ F S AA+ A
Sbjct: 39 SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSA- 97
Query: 420 NKQIHTLEGFNL 455
I L+G +L
Sbjct: 98 ---IQALDGRDL 106
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 60.5 bits (140), Expect = 1e-09
Identities = 30/70 (42%), Positives = 43/70 (61%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
RLYVGNL+W V L F++ G V ARV++DR +G SKG+GF+ +S + K
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSS----SQEVQK 305
Query: 426 QIHTLEGFNL 455
I++L G +L
Sbjct: 306 AINSLNGADL 315
Score = 51.2 bits (117), Expect = 6e-07
Identities = 24/66 (36%), Positives = 40/66 (60%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
+L+VGNL++ V QL + F G V+ V++D+ TG S+G+GF+ S +A +A +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTM-STAAEVEAAAQ 158
Query: 426 QIHTLE 443
Q + E
Sbjct: 159 QFNGYE 164
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 60.5 bits (140), Expect = 1e-09
Identities = 30/70 (42%), Positives = 43/70 (61%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
RLYVGNL+W V L F++ G V ARV++DR +G SKG+GF+ +S + K
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSS----SQEVQK 313
Query: 426 QIHTLEGFNL 455
I++L G +L
Sbjct: 314 AINSLNGADL 323
Score = 51.2 bits (117), Expect = 6e-07
Identities = 24/66 (36%), Positives = 40/66 (60%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
+L+VGNL++ V QL + F G V+ V++D+ TG S+G+GF+ S +A +A +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTM-STAAEVEAAAQ 158
Query: 426 QIHTLE 443
Q + E
Sbjct: 159 QFNGYE 164
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 60.5 bits (140), Expect = 1e-09
Identities = 31/70 (44%), Positives = 43/70 (61%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
+L+VGNL+WTV L F + G V ARVVFD TG S+GYGF+ ++S + A
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETA--- 234
Query: 426 QIHTLEGFNL 455
+ +L+GF L
Sbjct: 235 -LESLDGFEL 243
Score = 37.5 bits (83), Expect = 0.008
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFAS 395
+LY GNL + V L + F + V+++R TG S+G+ F+ ++
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSN 135
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 59.7 bits (138), Expect = 2e-09
Identities = 30/70 (42%), Positives = 43/70 (61%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
R+YVGNL+W V L FS+ G V ARV++DR +G SKG+GF+ + S +A
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNA--- 261
Query: 426 QIHTLEGFNL 455
I +L+G +L
Sbjct: 262 -IKSLDGADL 270
Score = 50.0 bits (114), Expect = 1e-06
Identities = 22/60 (36%), Positives = 35/60 (58%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
+L+VGNL + V QL + F G V+ V++D+ TG S+G+GF+ +S S A +
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 59.7 bits (138), Expect = 2e-09
Identities = 25/67 (37%), Positives = 39/67 (58%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
+++VG LAW ++R YF QFG + A ++ D++TG SKGYGF+ F +A A
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 426 QIHTLEG 446
++G
Sbjct: 78 PNPVIDG 84
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 59.7 bits (138), Expect = 2e-09
Identities = 25/67 (37%), Positives = 39/67 (58%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
+++VG LAW ++R YF QFG + A ++ D++TG SKGYGF+ F +A A
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 426 QIHTLEG 446
++G
Sbjct: 78 PNPVIDG 84
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 59.7 bits (138), Expect = 2e-09
Identities = 25/67 (37%), Positives = 39/67 (58%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
+++VG LAW ++R YF QFG + A ++ D++TG SKGYGF+ F +A A
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVAD 77
Query: 426 QIHTLEG 446
++G
Sbjct: 78 PNPVIDG 84
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 59.3 bits (137), Expect = 2e-09
Identities = 22/56 (39%), Positives = 38/56 (67%)
Frame = +3
Query: 240 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 407
+ +L++G ++W +LR+YF FG V A ++ DR+TG ++G+GF+ FA P+ A
Sbjct: 5 SCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVA 60
Score = 55.6 bits (128), Expect = 3e-08
Identities = 25/78 (32%), Positives = 43/78 (55%)
Frame = +3
Query: 234 ARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAAD 413
+ + +++VG LA +V + ++YF+QFG + V++D T +G+GFI + S A
Sbjct: 103 SNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDK 162
Query: 414 ATNKQIHTLEGFNLSVQL 467
K H L G + V+L
Sbjct: 163 VLQKTFHELNGKMVEVKL 180
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 59.3 bits (137), Expect = 2e-09
Identities = 22/56 (39%), Positives = 38/56 (67%)
Frame = +3
Query: 240 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 407
+ +L++G ++W +LR+YF FG V A ++ DR+TG ++G+GF+ FA P+ A
Sbjct: 5 SCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVA 60
Score = 55.6 bits (128), Expect = 3e-08
Identities = 25/78 (32%), Positives = 43/78 (55%)
Frame = +3
Query: 234 ARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAAD 413
+ + +++VG LA +V + ++YF+QFG + V++D T +G+GFI + S A
Sbjct: 103 SNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDK 162
Query: 414 ATNKQIHTLEGFNLSVQL 467
K H L G + V+L
Sbjct: 163 VLQKTFHELNGKMVEVKL 180
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 58.8 bits (136), Expect = 3e-09
Identities = 24/67 (35%), Positives = 42/67 (62%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
+L++G ++W +LR+YFS +G V A ++ DR+TG ++G+GFI FA P ++
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP-CVSERVIM 65
Query: 426 QIHTLEG 446
H ++G
Sbjct: 66 DKHIIDG 72
Score = 54.0 bits (124), Expect = 9e-08
Identities = 23/70 (32%), Positives = 37/70 (52%)
Frame = +3
Query: 237 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
R +++VG L ++ + + YF QFG + V++D +T +G+GFI F S A
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRV 167
Query: 417 TNKQIHTLEG 446
+K H L G
Sbjct: 168 LHKTFHELNG 177
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 58.8 bits (136), Expect = 3e-09
Identities = 24/67 (35%), Positives = 42/67 (62%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
+L++G ++W +LR+YFS +G V A ++ DR+TG ++G+GFI FA P ++
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP-CVSERVIM 65
Query: 426 QIHTLEG 446
H ++G
Sbjct: 66 DKHIIDG 72
Score = 54.0 bits (124), Expect = 9e-08
Identities = 23/70 (32%), Positives = 37/70 (52%)
Frame = +3
Query: 237 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
R +++VG L ++ + + YF QFG + V++D +T +G+GFI F S A
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRV 167
Query: 417 TNKQIHTLEG 446
+K H L G
Sbjct: 168 LHKTFHELNG 177
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 58.8 bits (136), Expect = 3e-09
Identities = 24/67 (35%), Positives = 42/67 (62%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
+L++G ++W +LR+YFS +G V A ++ DR+TG ++G+GFI FA P ++
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP-CVSERVIM 65
Query: 426 QIHTLEG 446
H ++G
Sbjct: 66 DKHIIDG 72
Score = 54.0 bits (124), Expect = 9e-08
Identities = 23/70 (32%), Positives = 37/70 (52%)
Frame = +3
Query: 237 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
R +++VG L ++ + + YF QFG + V++D +T +G+GFI F S A
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRV 167
Query: 417 TNKQIHTLEG 446
+K H L G
Sbjct: 168 LHKTFHELNG 177
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 58.4 bits (135), Expect = 4e-09
Identities = 24/62 (38%), Positives = 38/62 (61%)
Frame = +3
Query: 240 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 419
+ +L++G L+W LR+ F+ FG V A+V+ DR TG S+G+GF+ F AA A
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 420 NK 425
++
Sbjct: 94 SE 95
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 58.4 bits (135), Expect = 4e-09
Identities = 24/62 (38%), Positives = 38/62 (61%)
Frame = +3
Query: 240 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 419
+ +L++G L+W LR+ F+ FG V A+V+ DR TG S+G+GF+ F AA A
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 420 NK 425
++
Sbjct: 94 SE 95
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 58.0 bits (134), Expect = 5e-09
Identities = 23/76 (30%), Positives = 42/76 (55%)
Frame = +3
Query: 237 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
+ +++VG L T+ + R+YF +GPV +++D++T +G+GF+ F S A
Sbjct: 108 KTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSV 167
Query: 417 TNKQIHTLEGFNLSVQ 464
+K H L G + V+
Sbjct: 168 LHKTFHDLSGKQVEVK 183
Score = 55.2 bits (127), Expect = 4e-08
Identities = 24/73 (32%), Positives = 45/73 (61%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
+L+VG ++W +LRE+F+ +G V A V+ D+ TG +G+GF+ F+ PS D +
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPS-VLDRVLQ 65
Query: 426 QIHTLEGFNLSVQ 464
+ H+++ + V+
Sbjct: 66 EKHSIDTREVDVK 78
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 58.0 bits (134), Expect = 5e-09
Identities = 27/65 (41%), Positives = 37/65 (56%)
Frame = +3
Query: 222 MASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPS 401
MAS R +VG LAW R L F+Q+G V ++++ DR TG S+G+GF+ F
Sbjct: 1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60
Query: 402 AAADA 416
A DA
Sbjct: 61 AMKDA 65
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 58.0 bits (134), Expect = 5e-09
Identities = 27/65 (41%), Positives = 37/65 (56%)
Frame = +3
Query: 222 MASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPS 401
MAS R +VG LAW R L F+Q+G V ++++ DR TG S+G+GF+ F
Sbjct: 1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60
Query: 402 AAADA 416
A DA
Sbjct: 61 AMKDA 65
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 57.2 bits (132), Expect = 9e-09
Identities = 27/77 (35%), Positives = 41/77 (53%)
Frame = +3
Query: 237 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
R ++YV L W L YF +FG + A+VV D +T SKG+GF+ F +A A
Sbjct: 7 RETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRA 66
Query: 417 TNKQIHTLEGFNLSVQL 467
HT++G ++ +L
Sbjct: 67 CENPNHTIDGRTVNCKL 83
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 57.2 bits (132), Expect = 9e-09
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Frame = +3
Query: 240 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 419
+ +LY+G L+ L++ FS F V ARV+ ++ TG S+GYGF+ F S +A A
Sbjct: 30 STKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAI 89
Query: 420 NKQI-HTLEGFNLSVQL 467
+ L GFN+SV +
Sbjct: 90 SAMNGQELNGFNISVNV 106
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 57.2 bits (132), Expect = 9e-09
Identities = 24/57 (42%), Positives = 34/57 (59%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
R +VG LAW L+ FSQFG V ++++ DR +G S+G+GF+ F A DA
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 57.2 bits (132), Expect = 9e-09
Identities = 24/57 (42%), Positives = 34/57 (59%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
R +VG LAW L+ FSQFG V ++++ DR +G S+G+GF+ F A DA
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 57.2 bits (132), Expect = 9e-09
Identities = 24/57 (42%), Positives = 34/57 (59%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
R +VG LAW L+ FSQFG V ++++ DR +G S+G+GF+ F A DA
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 57.2 bits (132), Expect = 9e-09
Identities = 24/57 (42%), Positives = 34/57 (59%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
R +VG LAW L+ FSQFG V ++++ DR +G S+G+GF+ F A DA
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 57.2 bits (132), Expect = 9e-09
Identities = 26/73 (35%), Positives = 43/73 (58%)
Frame = +3
Query: 240 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 419
+++L+VG L+W L++ F+ FG V A V+ DR TG S+G+GF+ F + D+
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSF----SCEDSA 89
Query: 420 NKQIHTLEGFNLS 458
N I ++G L+
Sbjct: 90 NNAIKEMDGKELN 102
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 57.2 bits (132), Expect = 9e-09
Identities = 26/73 (35%), Positives = 43/73 (58%)
Frame = +3
Query: 240 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 419
+++L+VG L+W L++ F+ FG V A V+ DR TG S+G+GF+ F + D+
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSF----SCEDSA 89
Query: 420 NKQIHTLEGFNLS 458
N I ++G L+
Sbjct: 90 NNAIKEMDGKELN 102
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 57.2 bits (132), Expect = 9e-09
Identities = 28/97 (28%), Positives = 51/97 (52%)
Frame = +3
Query: 171 LIGERSLHLLEIVSL*VMASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDR 350
L + S H+ S+ +++++VG ++++ LRE FS++G V A+++ DR
Sbjct: 10 LFSQTSSHVTASSSMLQSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDR 69
Query: 351 STGLSKGYGFIEFASPSAAADATNKQIHTLEGFNLSV 461
TG S+G+ F+ F S A++A L G + V
Sbjct: 70 ETGRSRGFAFVTFTSTEEASNAMQLDGQDLHGRRIRV 106
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 57.2 bits (132), Expect = 9e-09
Identities = 24/67 (35%), Positives = 39/67 (58%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
+++VG LAW ++++F QFG + A V+ D+++G SKGYGF+ F AA A
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 426 QIHTLEG 446
++G
Sbjct: 74 ATPVIDG 80
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 57.2 bits (132), Expect = 9e-09
Identities = 24/67 (35%), Positives = 39/67 (58%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
+++VG LAW ++++F QFG + A V+ D+++G SKGYGF+ F AA A
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 426 QIHTLEG 446
++G
Sbjct: 74 ATPVIDG 80
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 57.2 bits (132), Expect = 9e-09
Identities = 24/67 (35%), Positives = 39/67 (58%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
+++VG LAW ++++F QFG + A V+ D+++G SKGYGF+ F AA A
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 426 QIHTLEG 446
++G
Sbjct: 74 ATPVIDG 80
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/51 (50%), Positives = 30/51 (58%)
Frame = +3
Query: 237 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 389
R +++VGNL W LR YF QFG V A VV + G SKGYGFI F
Sbjct: 10 RVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITF 60
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 56.8 bits (131), Expect = 1e-08
Identities = 24/73 (32%), Positives = 43/73 (58%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
+L++G ++W LREYFS FG V V+ +++TG +G+GF+ F+ P A D +
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDP-AVIDRVLQ 65
Query: 426 QIHTLEGFNLSVQ 464
H ++ ++ V+
Sbjct: 66 DKHHIDNRDVDVK 78
Score = 52.4 bits (120), Expect = 3e-07
Identities = 23/79 (29%), Positives = 41/79 (51%)
Frame = +3
Query: 228 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 407
+ R +++VG L + + R YF +GPV A ++ D++T +G+GF+ F S +
Sbjct: 105 ANVRTKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSV 164
Query: 408 ADATNKQIHTLEGFNLSVQ 464
+K H L G + V+
Sbjct: 165 DLVLHKTFHDLNGKQVEVK 183
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 56.0 bits (129), Expect = 2e-08
Identities = 24/57 (42%), Positives = 36/57 (63%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
R ++G LAWT R LR+ F ++G + A+VV D+ +G S+G+GFI F A +A
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEA 64
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 55.6 bits (128), Expect = 3e-08
Identities = 26/67 (38%), Positives = 35/67 (52%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
++YVG L WT L +F +FG + VV DR T S+GYGF+ F +A A
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73
Query: 426 QIHTLEG 446
T+EG
Sbjct: 74 PNPTIEG 80
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 55.6 bits (128), Expect = 3e-08
Identities = 25/78 (32%), Positives = 43/78 (55%)
Frame = +3
Query: 234 ARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAAD 413
+ + +++VG LA +V + ++YF+QFG + V++D T +G+GFI + S A
Sbjct: 30 SNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDK 89
Query: 414 ATNKQIHTLEGFNLSVQL 467
K H L G + V+L
Sbjct: 90 VLQKTFHELNGKMVEVKL 107
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 55.2 bits (127), Expect = 4e-08
Identities = 31/62 (50%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFS--QFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 419
+LYV NLAW LRE F+ F PV SARVVF G S GYGF+ FA+ A +A
Sbjct: 195 KLYVSNLAWKARSTHLRELFTAADFNPV-SARVVFADPEGRSSGYGFVSFATREEAENAI 253
Query: 420 NK 425
K
Sbjct: 254 TK 255
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 55.2 bits (127), Expect = 4e-08
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
R +VG LAW + + F++FG V ++++ DR TG SKG+ F+ F + A ++
Sbjct: 45 RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDR 104
Query: 426 QI-HTLEGFNLSVQLQNN 476
L+G N++ Q + +
Sbjct: 105 MNGQELDGRNITAQARGS 122
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 55.2 bits (127), Expect = 4e-08
Identities = 25/67 (37%), Positives = 38/67 (56%)
Frame = +3
Query: 243 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATN 422
+R++VG L+W V RQL F ++G + +++ R TG +G+GFI F A DA
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI- 70
Query: 423 KQIHTLE 443
K +H E
Sbjct: 71 KHMHGRE 77
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 55.2 bits (127), Expect = 4e-08
Identities = 25/67 (37%), Positives = 38/67 (56%)
Frame = +3
Query: 243 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATN 422
+R++VG L+W V RQL F ++G + +++ R TG +G+GFI F A DA
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI- 70
Query: 423 KQIHTLE 443
K +H E
Sbjct: 71 KHMHGRE 77
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 54.4 bits (125), Expect = 7e-08
Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Frame = +3
Query: 240 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPS-AAADA 416
A R+YVGNL+ T LRE FS +G V A V+ DR T S+G+GF+ ++S S A A
Sbjct: 2 ATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAV 61
Query: 417 TNKQIHTLEGFNLSVQL 467
+ L G +SV+L
Sbjct: 62 SGMDGKELNGRRVSVKL 78
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 54.0 bits (124), Expect = 9e-08
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 389
+LYVGNL + + QLR+ F FGPV+ ++ D TG KG+GFI+F
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF 313
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +3
Query: 285 RQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 389
R + E+FS+ G V+ R++ DR++ SKG G+IEF
Sbjct: 182 RDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEF 216
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 54.0 bits (124), Expect = 9e-08
Identities = 25/59 (42%), Positives = 38/59 (64%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
+++ NL ++ H+ L E FS FGP+ S +V D S G SKGYGF+++ + AA A +K
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPS-GQSKGYGFVQYDTDEAAQGAIDK 192
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/59 (47%), Positives = 37/59 (62%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
LYVG+L TV QL E F+Q G V S RV D +T S GYG++ +A+P A+ A N+
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Score = 51.2 bits (117), Expect = 6e-07
Identities = 28/69 (40%), Positives = 43/69 (62%)
Frame = +3
Query: 210 SL*VMASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 389
SL A ++ + LYV NL +V +LRE+F+ FG + S +V+ D S G+S+G GF+ F
Sbjct: 316 SLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPS-GVSRGSGFVAF 374
Query: 390 ASPSAAADA 416
++P A A
Sbjct: 375 STPEEATRA 383
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATN 422
+YV NL+ ++ +L + F +FG S ++ D G SKG+GF+ F + AA A +
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFENSDDAARAVD 282
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 52.8 bits (121), Expect = 2e-07
Identities = 27/67 (40%), Positives = 43/67 (64%)
Frame = +3
Query: 225 ASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSA 404
A +++ LYV NL ++ +L+E FS FG V S++V+ D + G SKG GF+ FA+P
Sbjct: 126 ADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN-GTSKGSGFVAFATPEE 184
Query: 405 AADATNK 425
A +A ++
Sbjct: 185 ATEAMSQ 191
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/64 (35%), Positives = 34/64 (53%)
Frame = +3
Query: 225 ASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSA 404
A+ + +YV NLA + L+ F ++G + SA VV G SKG+GF+ F +
Sbjct: 23 ANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSA-VVMKDGEGKSKGFGFVNFENADD 81
Query: 405 AADA 416
AA A
Sbjct: 82 AARA 85
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 52.4 bits (120), Expect = 3e-07
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Frame = +3
Query: 219 VMASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASP 398
V A L++ N+ G ++L F FG V SA+V D++TG+SK +GF+ + S
Sbjct: 341 VQTEGPEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQ 400
Query: 399 SAAADATNKQI-HTLEGFNLSVQLQNN 476
+AA +A + L G L VQL+ +
Sbjct: 401 AAAQNAIDMMNGRHLGGKKLKVQLKRD 427
Score = 31.5 bits (68), Expect = 0.53
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = +3
Query: 240 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 419
+ +L+VG + + QL F +F V ++ D+ T S+G F+ S A
Sbjct: 17 SVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLV 76
Query: 420 N--KQIHTLEGFNLSVQLQ 470
N TL G N +Q++
Sbjct: 77 NACHNKKTLPGANSLLQVK 95
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 52.4 bits (120), Expect = 3e-07
Identities = 23/57 (40%), Positives = 34/57 (59%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
+++V L W L E F Q+G ++ + VFD+ +G SKGYGFI + S S A +A
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNA 197
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/73 (28%), Positives = 37/73 (50%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
++YV N+ + ++L +FS+FG ++ + D+ TG KG+ + S +A A +
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE 305
Query: 426 QIHTLEGFNLSVQ 464
T EG L Q
Sbjct: 306 PHKTFEGHILHCQ 318
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 52.4 bits (120), Expect = 3e-07
Identities = 23/57 (40%), Positives = 34/57 (59%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
+++V L W L E F Q+G ++ + VFD+ +G SKGYGFI + S S A +A
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNA 197
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/73 (28%), Positives = 37/73 (50%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
++YV N+ + ++L +FS+FG ++ + D+ TG KG+ + S +A A +
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE 305
Query: 426 QIHTLEGFNLSVQ 464
T EG L Q
Sbjct: 306 PHKTFEGHILHCQ 318
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 52.4 bits (120), Expect = 3e-07
Identities = 23/57 (40%), Positives = 34/57 (59%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
+++V L W L E F Q+G ++ + VFD+ +G SKGYGFI + S S A +A
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNA 197
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/73 (28%), Positives = 37/73 (50%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
++YV N+ + ++L +FS+FG ++ + D+ TG KG+ + S +A A +
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE 305
Query: 426 QIHTLEGFNLSVQ 464
T EG L Q
Sbjct: 306 PHKTFEGHILHCQ 318
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 52.4 bits (120), Expect = 3e-07
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Frame = +3
Query: 162 YRALIGERSLHLLEIVSL*VM-ASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARV 338
+R L+ S LL SL V ST + RL+V L+ + +L++ F+ FG + ARV
Sbjct: 7 FRRLVAGSS-SLLSSPSLCVRRCSTLTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARV 65
Query: 339 VFDRSTGLSKGYGFIEFASPSAAADA 416
+ DR +G SKG+GF+ +A+ A A
Sbjct: 66 ITDRDSGRSKGFGFVTYATIEDAEKA 91
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/61 (45%), Positives = 36/61 (59%)
Frame = +3
Query: 240 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 419
A RLYVGNL + LR+ F FG V+ +V D TGL KG+GF++FA A +A
Sbjct: 284 ARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNAL 342
Query: 420 N 422
N
Sbjct: 343 N 343
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 389
++ +A R + E+FS+ G V+ R++ DR + S+G G++EF
Sbjct: 184 VFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEF 230
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 52.4 bits (120), Expect = 3e-07
Identities = 27/65 (41%), Positives = 40/65 (61%)
Frame = +3
Query: 231 TARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAA 410
T + LYV NL +V + +L E FS+FG + S +V+ S G+SKG GF+EF++ A+
Sbjct: 219 TRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMV-HSNGISKGVGFVEFSTSEEAS 277
Query: 411 DATNK 425
A K
Sbjct: 278 KAMLK 282
Score = 48.4 bits (110), Expect = 4e-06
Identities = 27/64 (42%), Positives = 39/64 (60%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 428
++V NL ++ ++QL + FS FG V S +V D S G+SKGYGF++F S + A N
Sbjct: 33 VFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDAS-GVSKGYGFVQFYSDLSVYTACNFH 91
Query: 429 IHTL 440
TL
Sbjct: 92 NGTL 95
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/85 (31%), Positives = 38/85 (44%)
Frame = +3
Query: 171 LIGERSLHLLEIVSL*VMASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDR 350
LI + +H+ VS + +YV NL T L+ F +FG + SA VV
Sbjct: 95 LIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSA-VVMKD 153
Query: 351 STGLSKGYGFIEFASPSAAADATNK 425
G S+ +GF+ F AA A K
Sbjct: 154 GEGKSRRFGFVNFEKAEAAVTAIEK 178
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 52.4 bits (120), Expect = 3e-07
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Frame = +3
Query: 243 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATN 422
A L++ N+ ++L F FG V SA+V D++TG+SK +GFI + S +AA +A N
Sbjct: 339 ANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAIN 398
Query: 423 KQIH-TLEGFNLSVQLQNN 476
L G L VQL+ +
Sbjct: 399 TMNGCQLSGKKLKVQLKRD 417
Score = 34.3 bits (75), Expect = 0.075
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPS---AAADA 416
+L+VG L V +++ FS++G ++ +++ S SKG F+++ S AA +A
Sbjct: 110 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQIL-RGSLQTSKGCLFLKYESKEQAVAAMEA 168
Query: 417 TNKQIHTLEGFNL 455
N + H +EG N+
Sbjct: 169 LNGR-HIMEGANV 180
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 52.4 bits (120), Expect = 3e-07
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Frame = +3
Query: 243 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATN 422
A L++ N+ ++L F FG V SA+V D++TG+SK +GFI + S +AA +A N
Sbjct: 330 ANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAIN 389
Query: 423 KQIH-TLEGFNLSVQLQNN 476
L G L VQL+ +
Sbjct: 390 TMNGCQLSGKKLKVQLKRD 408
Score = 34.3 bits (75), Expect = 0.075
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPS---AAADA 416
+L+VG L V +++ FS++G ++ +++ S SKG F+++ S AA +A
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQIL-RGSLQTSKGCLFLKYESKEQAVAAMEA 159
Query: 417 TNKQIHTLEGFNL 455
N + H +EG N+
Sbjct: 160 LNGR-HIMEGANV 171
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/64 (37%), Positives = 40/64 (62%)
Frame = +3
Query: 243 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATN 422
+R++VG L+ V R L FS+FG + +++ +R TG S+G+GFI FA A D +
Sbjct: 7 SRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFAD-RRAMDESI 65
Query: 423 KQIH 434
+++H
Sbjct: 66 REMH 69
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 51.6 bits (118), Expect = 5e-07
Identities = 22/63 (34%), Positives = 37/63 (58%)
Frame = +3
Query: 228 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 407
++ RLYVGNL +T+ +L + F + G V ++V+D+ T S+G+GF+ S A
Sbjct: 111 ASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEA 170
Query: 408 ADA 416
+A
Sbjct: 171 KEA 173
Score = 50.0 bits (114), Expect = 1e-06
Identities = 20/50 (40%), Positives = 33/50 (66%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFAS 395
++Y GNL W + + L++ F V A+V+++R+TG S+G+GFI F S
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFES 269
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 51.6 bits (118), Expect = 5e-07
Identities = 26/67 (38%), Positives = 41/67 (61%)
Frame = +3
Query: 234 ARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAAD 413
A+ + +YV N+ V +LR++FSQ G + S +++ D G SKG+GF+ F++P A D
Sbjct: 301 AKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEK-GKSKGFGFVCFSTPEEAID 359
Query: 414 ATNKQIH 434
A K H
Sbjct: 360 AV-KTFH 365
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/56 (37%), Positives = 30/56 (53%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
LY+ NL V LRE F++FG + S + D + L +GY F+ F +P A A
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENR-LCRGYAFVNFDNPEDARRA 257
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 407
++V NL +V + L++ F +FG + S +V G S+GYGF++F AA
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQEDAA 165
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 51.6 bits (118), Expect = 5e-07
Identities = 22/50 (44%), Positives = 32/50 (64%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFAS 395
++YVGNL W LR +FS+FG + S RV+ DR TG ++ + F+ F S
Sbjct: 213 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTS 262
Score = 35.9 bits (79), Expect = 0.025
Identities = 24/77 (31%), Positives = 35/77 (45%)
Frame = +3
Query: 177 GERSLHLLEIVSL*VMASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRST 356
GE + +VS R LYV N+ + QL + F FG V S V + T
Sbjct: 86 GEAEPNKDSVVSKAEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQT 145
Query: 357 GLSKGYGFIEFASPSAA 407
G S+G G++ S ++A
Sbjct: 146 GESRGSGYVTMGSINSA 162
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 51.2 bits (117), Expect = 6e-07
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 428
LY+G L + L FS FG + A+V+ DR TGLSKGYGF+++A A A
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 429 I-HTLEGFNLSVQL 467
+ EG L+V++
Sbjct: 542 NGYRFEGRTLAVRI 555
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 51.2 bits (117), Expect = 6e-07
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 428
LY+G L + L FS FG + A+V+ DR TGLSKGYGF+++A A A
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 429 I-HTLEGFNLSVQL 467
+ EG L+V++
Sbjct: 542 NGYRFEGRTLAVRI 555
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 51.2 bits (117), Expect = 6e-07
Identities = 23/73 (31%), Positives = 41/73 (56%)
Frame = +3
Query: 225 ASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSA 404
+S + +L+VG ++W YF +FG V + ++ DR TG +G+GF+ FA SA
Sbjct: 60 SSMSSPGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFAD-SA 118
Query: 405 AADATNKQIHTLE 443
A+ ++ H ++
Sbjct: 119 VAEKVLEEDHVID 131
Score = 42.7 bits (96), Expect = 2e-04
Identities = 15/54 (27%), Positives = 33/54 (61%)
Frame = +3
Query: 228 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 389
+ ++ +++VG L + +L+ YF +G + ++++D TG S+G+GF+ F
Sbjct: 152 AVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTF 205
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 50.8 bits (116), Expect = 8e-07
Identities = 24/59 (40%), Positives = 37/59 (62%)
Frame = +3
Query: 240 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
A++L++G L++ + L E FS+ G V A++V DR + SKG+GF+ FAS A A
Sbjct: 33 ASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKA 91
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/57 (38%), Positives = 36/57 (63%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
+L V + W + L++Y S+FG ++ V+ DRSTG S+G+G++ FAS A +A
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNA 60
Score = 44.0 bits (99), Expect = 9e-05
Identities = 21/72 (29%), Positives = 38/72 (52%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
+++VG L LR+YF +FG +Q A + D +G+GF+ FA + AD +
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAE-NGVADRVAR 299
Query: 426 QIHTLEGFNLSV 461
+ H + G +++
Sbjct: 300 RSHEICGQEVAI 311
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/59 (45%), Positives = 38/59 (64%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
LYV NL TV +LRE F++FG + S +V+ D S G SKG GF+ F++ S A+ N+
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPS-GTSKGSGFVAFSAASEASRVLNE 387
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/59 (38%), Positives = 34/59 (57%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
LYVG+L + V QL +YF++ V S RV D +T S GYG++ +++ A A K
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Score = 44.0 bits (99), Expect = 9e-05
Identities = 24/67 (35%), Positives = 37/67 (55%)
Frame = +3
Query: 225 ASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSA 404
A + L+V NL +V ++ L E FS G + S +V D G S+GYGF++F + +
Sbjct: 128 ARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHM-GQSRGYGFVQFDTEDS 186
Query: 405 AADATNK 425
A +A K
Sbjct: 187 AKNAIEK 193
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/64 (34%), Positives = 34/64 (53%)
Frame = +3
Query: 225 ASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSA 404
A + +YV NL+ +L+ F Q+G + SA V+ D G S+ +GF+ F +P
Sbjct: 219 ADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPED 277
Query: 405 AADA 416
AA A
Sbjct: 278 AARA 281
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 50.0 bits (114), Expect = 1e-06
Identities = 27/65 (41%), Positives = 38/65 (58%)
Frame = +3
Query: 231 TARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAA 410
T R +YV NL +G +LR+ F +FG + SA V+ D+S G S+ +GF+ F AAA
Sbjct: 225 TPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQS-GNSRCFGFVNFECTEAAA 283
Query: 411 DATNK 425
A K
Sbjct: 284 SAVEK 288
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/64 (34%), Positives = 43/64 (67%)
Frame = +3
Query: 234 ARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAAD 413
++ A LY+ NL +V +L+E FS++G V S++V+ + G+S+G+GF+ +++P A
Sbjct: 329 SQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLN-PQGMSRGFGFVAYSNPEEALR 387
Query: 414 ATNK 425
A ++
Sbjct: 388 ALSE 391
Score = 47.6 bits (108), Expect = 8e-06
Identities = 23/59 (38%), Positives = 36/59 (61%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
+++ NL ++ ++ L E FS FG + S +V D TG SKGYGF++F +A A +K
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDK 195
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/57 (38%), Positives = 33/57 (57%)
Frame = +3
Query: 237 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 407
+A LY+G + ++ +FSQFG V+ RV ++ TG SK +GFI+F P A
Sbjct: 58 KATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVA 114
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = +3
Query: 237 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
+ +++VG LAW + ++F ++G + A ++ D+ T SKGYGF+ F AA A
Sbjct: 15 KLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRA 74
Query: 417 TNKQIHTLEG 446
+ G
Sbjct: 75 CEDSTPIING 84
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 48.8 bits (111), Expect = 3e-06
Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQ-FGPVQSARVVFDRSTGLSKGYGFIEFA 392
++VG+LA V L + F +G V+ A+VV DR+TG SKGYGF+ FA
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFA 204
Score = 47.6 bits (108), Expect = 8e-06
Identities = 23/60 (38%), Positives = 35/60 (58%)
Frame = +3
Query: 228 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 407
S + L++G+L + + F+Q G SA+V+ ++ TG S+GYGFIEF S S A
Sbjct: 55 SASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVA 114
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 48.8 bits (111), Expect = 3e-06
Identities = 22/57 (38%), Positives = 33/57 (57%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
+++V L W L + F Q+G ++ + V D+ +G SKGYGFI F S S A +A
Sbjct: 129 KIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNA 185
Score = 46.8 bits (106), Expect = 1e-05
Identities = 22/77 (28%), Positives = 41/77 (53%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
++YV N++ + ++L E+FS+FG ++ + D++TG KG+ + S +A A +
Sbjct: 228 KIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEE 287
Query: 426 QIHTLEGFNLSVQLQNN 476
T EG L N+
Sbjct: 288 PHKTFEGHVLHCHKAND 304
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 48.8 bits (111), Expect = 3e-06
Identities = 22/57 (38%), Positives = 39/57 (68%)
Frame = +3
Query: 237 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 407
+ + LY+ NL +V +L+E FS++G V S +V+ + S GLS+G+GF+ +++P A
Sbjct: 326 QGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPEEA 381
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/59 (40%), Positives = 37/59 (62%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
+YV NL + +L++ F ++G + SA V+ D+S G S+ +GF+ F SP AAA A K
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQS-GNSRSFGFVNFVSPEAAAVAVEK 284
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/59 (37%), Positives = 34/59 (57%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
+++ NL ++ ++ L E FS FG + S +V D G SKGYGF++F A A +K
Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDK 191
Score = 41.1 bits (92), Expect = 7e-04
Identities = 23/56 (41%), Positives = 32/56 (57%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
LYVG+L +V L + F+Q PV + RV D T S GY ++ FA+P A+ A
Sbjct: 47 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRA 101
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 48.8 bits (111), Expect = 3e-06
Identities = 22/52 (42%), Positives = 30/52 (57%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPS 401
R++VG L + Q+RE FGP++ +V DR TG SKGY F + PS
Sbjct: 376 RIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPS 427
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 48.8 bits (111), Expect = 3e-06
Identities = 27/69 (39%), Positives = 38/69 (55%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 428
L V NL LR+ F QFGPV+ + D TG +G+GF++F P+ AADA
Sbjct: 38 LLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAK--- 94
Query: 429 IHTLEGFNL 455
H ++G+ L
Sbjct: 95 -HHMDGYLL 102
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/58 (37%), Positives = 36/58 (62%)
Frame = +3
Query: 243 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
++++VG L+ + L+E F FG + A VV DR +GLS+G+GF+ + S A +A
Sbjct: 36 SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNA 93
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 48.0 bits (109), Expect = 6e-06
Identities = 23/53 (43%), Positives = 34/53 (64%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 407
L++G+L + V L FSQ G + S +V+ ++ TG +GYGFIEF S +AA
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAA 78
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFS-QFGPVQSARVVFDRSTGLSKGYGFIEFASPS 401
++VG+LA V L+E F + V+ A+VV D STG SKGYGF++FA S
Sbjct: 118 IFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEES 169
Score = 31.5 bits (68), Expect = 0.53
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = +3
Query: 228 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 407
S + V NL V +L++ FSQ G V ++ +KGYG+++F + +A
Sbjct: 232 SDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIP------ATKGYGYVQFKTRPSA 285
Query: 408 ADATNK 425
+A +
Sbjct: 286 EEAVQR 291
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 48.0 bits (109), Expect = 6e-06
Identities = 22/57 (38%), Positives = 32/57 (56%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
RL+V NL +T +L E+FS FG + +V D+ T S+G +I + P AA A
Sbjct: 262 RLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARA 318
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/57 (36%), Positives = 35/57 (61%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
+L+V N+A+ R+LR+ FS FG ++S R+ ++ G GY F+EF + A +A
Sbjct: 670 KLHVKNIAFEATKRELRQLFSPFGQIKSMRLP-KKNIGQYAGYAFVEFVTKQEALNA 725
Score = 29.5 bits (63), Expect = 2.1
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQF---GPVQSARVVFDRSTG--LSKGYGFIEFASPSAAAD 413
L V NL++ L+++F++ G + S ++ + LS GYGF+EF S A
Sbjct: 571 LNVKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEFDSVETATS 630
Query: 414 A-TNKQIHTLEGFNLSVQLQNN 476
+ Q L+G L ++ N
Sbjct: 631 VYRDLQGTVLDGHALILRFCEN 652
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 47.6 bits (108), Expect = 8e-06
Identities = 22/52 (42%), Positives = 32/52 (61%)
Frame = +3
Query: 240 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFAS 395
+ L+V L+ LR F+QFG V A+VV DR +G SKG+GF+ +A+
Sbjct: 55 STNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYAT 106
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 47.6 bits (108), Expect = 8e-06
Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQ-FGPVQSARVVFDRSTGLSKGYGFIEFASPS 401
++VG+LA V L E F + V+ A+VV DR+TG SKGYGF+ FA S
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADES 226
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +3
Query: 228 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 407
S L++G+L + L F G +A+V+ ++ G S+GYGFIEF + + A
Sbjct: 75 SAGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATA 134
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 47.6 bits (108), Expect = 8e-06
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +3
Query: 228 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 407
S+ A R+Y+GN+ TV + QL + + G V+ +V++D+ +G S+ +GF S A
Sbjct: 71 SSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDA 130
Query: 408 ADATNK-QIHTLEGFNLSVQL 467
K +T+EG + V +
Sbjct: 131 NAVVEKLNGNTVEGREIKVNI 151
Score = 45.6 bits (103), Expect = 3e-05
Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASP---SAAADA 416
++YVGNLA TV L FS+ G V SA+V T S G+GF+ F+S AA A
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVA 237
Query: 417 TNKQIHTLEGFNLSV 461
N + LEG + V
Sbjct: 238 LNNSL--LEGQKIRV 250
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 47.2 bits (107), Expect = 1e-05
Identities = 27/69 (39%), Positives = 37/69 (53%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 428
L V NL LR F QFGPV+ + D TG +G+GFI+F P+ AA+A
Sbjct: 39 LLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAK--- 95
Query: 429 IHTLEGFNL 455
H ++G+ L
Sbjct: 96 -HQMDGYLL 103
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGP-VQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
++VG+LA V L E FS+ P V++A+VV D +TG SKGYGF+ F + A
Sbjct: 201 IFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 257
Score = 34.3 bits (75), Expect = 0.075
Identities = 20/66 (30%), Positives = 35/66 (53%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 428
++VG L +V L++ FS+FG + S ++ + KG GF++F + A +A K
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKI------PVGKGCGFVQFVNRPNAEEALEKL 361
Query: 429 IHTLEG 446
T+ G
Sbjct: 362 NGTVIG 367
Score = 31.1 bits (67), Expect = 0.70
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFS--QFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 407
++VG+L + L F+ + + S +V+ ++ G S+GYGF+EF S A
Sbjct: 105 IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVA 159
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 46.8 bits (106), Expect = 1e-05
Identities = 17/53 (32%), Positives = 35/53 (66%)
Frame = +3
Query: 237 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFAS 395
+ +++VG + +V + +E+F QFG ++ +++ D STG S+G+GF+ + S
Sbjct: 128 KTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYES 180
Score = 44.0 bits (99), Expect = 9e-05
Identities = 19/75 (25%), Positives = 41/75 (54%)
Frame = +3
Query: 240 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 419
A +++VG LA + ++F ++G + + ++ DR TG +G+GF+ +A S+ D
Sbjct: 41 AGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYAD-SSVVDKV 99
Query: 420 NKQIHTLEGFNLSVQ 464
+ H + G + ++
Sbjct: 100 IQDNHIIIGKQVEIK 114
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/67 (34%), Positives = 35/67 (52%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
+L++ LA LR FS +G ++ A V+ D+ TG SKGYGF+ F A A +
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE 135
Query: 426 QIHTLEG 446
++G
Sbjct: 136 PSKKIDG 142
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/74 (24%), Positives = 39/74 (52%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
++YV N+ + + +L +F +G V+ + FD+ TG S+G+ + + A A
Sbjct: 168 KIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALAD 227
Query: 426 QIHTLEGFNLSVQL 467
+ ++G +L+ +L
Sbjct: 228 PVKVIDGKHLNCKL 241
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/67 (34%), Positives = 35/67 (52%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
+L++ LA LR FS +G ++ A V+ D+ TG SKGYGF+ F A A +
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE 135
Query: 426 QIHTLEG 446
++G
Sbjct: 136 PSKKIDG 142
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/74 (24%), Positives = 39/74 (52%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
++YV N+ + + +L +F +G V+ + FD+ TG S+G+ + + A A
Sbjct: 168 KIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALAD 227
Query: 426 QIHTLEGFNLSVQL 467
+ ++G +L+ +L
Sbjct: 228 PVKVIDGKHLNCKL 241
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/65 (35%), Positives = 37/65 (56%)
Frame = +3
Query: 231 TARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAA 410
T+ ++VG+L+ V L + FS F ARV++D+ TG S+G+GF+ F + A
Sbjct: 140 TSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQ 199
Query: 411 DATNK 425
A N+
Sbjct: 200 TAINE 204
Score = 33.9 bits (74), Expect = 0.099
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Frame = +3
Query: 228 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVV-FDRSTGLSKGYGFIEFASPSA 404
ST R+ +YVGN+ V L+E F+ GPV+S++++ D+S+ YGF+ + +
Sbjct: 56 STCRS--VYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS-----YGFVHYFDRRS 108
Query: 405 AA 410
AA
Sbjct: 109 AA 110
Score = 30.7 bits (66), Expect = 0.93
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF-ASPSAA 407
+YVGNLA V L YF G A V+ + KG+GF+ + P AA
Sbjct: 267 VYVGNLAPEVTQLDLHRYFHALG----AGVIEEVRVQRDKGFGFVRYNTHPEAA 316
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 46.8 bits (106), Expect = 1e-05
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
++V W L+ F +G ++ VV D+ TG KGYGF+ F + A +A +
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKR 468
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/65 (35%), Positives = 37/65 (56%)
Frame = +3
Query: 231 TARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAA 410
T+ ++VG+L+ V L + FS F ARV++D+ TG S+G+GF+ F + A
Sbjct: 144 TSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQ 203
Query: 411 DATNK 425
A N+
Sbjct: 204 TAINE 208
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVV-FDRSTGLSKGYGFIEFASPSAAADA 416
+Y GN+ V L+E F+ GP++S +++ D+S+ YGF+ + A+ A
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS-----YGFVHYFDRRCASMA 116
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = +3
Query: 219 VMASTARAAR-LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFAS 395
V +TA R L++G+L + + L F+ G + SA+V+ ++ TG +GYGFIEFAS
Sbjct: 53 VQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFAS 112
Query: 396 PSAA 407
+AA
Sbjct: 113 HAAA 116
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYF-SQFGPVQSARVVFDRSTGLSKGYGFIEFASPS 401
++VG+LA V L E F + + V+ A+VV DR TG +KGYGF+ F+ S
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDES 208
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
++VG L +V L+ FSQ+G + ++ K GF++F+ S A +A
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKI------PAGKRCGFVQFSEKSCAEEA 312
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = +3
Query: 219 VMASTARAAR-LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFAS 395
V +TA R L++G+L + + L F+ G + SA+V+ ++ TG +GYGFIEFAS
Sbjct: 53 VQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFAS 112
Query: 396 PSAA 407
+AA
Sbjct: 113 HAAA 116
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYF-SQFGPVQSARVVFDRSTGLSKGYGFIEFASPS 401
++VG+LA V L E F + + V+ A+VV DR TG +KGYGF+ F+ S
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDES 208
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/69 (36%), Positives = 39/69 (56%)
Frame = +3
Query: 240 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 419
+A+L+V L+ + LR+ FS FG ++ AR++ D T KG+GFI F S D
Sbjct: 6 SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDS----EDDA 61
Query: 420 NKQIHTLEG 446
K + +L+G
Sbjct: 62 RKALKSLDG 70
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/77 (25%), Positives = 40/77 (51%)
Frame = +3
Query: 234 ARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAAD 413
A ++++G L + ++F ++G + + ++ DR TG +G+GFI FA PS D
Sbjct: 16 ASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPS-VVD 74
Query: 414 ATNKQIHTLEGFNLSVQ 464
+ H + G + ++
Sbjct: 75 KVIEDTHVINGKQVEIK 91
Score = 44.8 bits (101), Expect = 5e-05
Identities = 18/63 (28%), Positives = 37/63 (58%)
Frame = +3
Query: 237 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
+ +++VG + TV +L+++F+++G V +V+ D T S+G+GF+ F S +
Sbjct: 107 KTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDEL 166
Query: 417 TNK 425
+K
Sbjct: 167 LSK 169
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/77 (25%), Positives = 40/77 (51%)
Frame = +3
Query: 234 ARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAAD 413
A ++++G L + ++F ++G + + ++ DR TG +G+GFI FA PS D
Sbjct: 16 ASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPS-VVD 74
Query: 414 ATNKQIHTLEGFNLSVQ 464
+ H + G + ++
Sbjct: 75 KVIEDTHVINGKQVEIK 91
Score = 44.8 bits (101), Expect = 5e-05
Identities = 18/63 (28%), Positives = 37/63 (58%)
Frame = +3
Query: 237 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
+ +++VG + TV +L+++F+++G V +V+ D T S+G+GF+ F S +
Sbjct: 107 KTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDEL 166
Query: 417 TNK 425
+K
Sbjct: 167 LSK 169
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 46.4 bits (105), Expect = 2e-05
Identities = 19/50 (38%), Positives = 32/50 (64%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFAS 395
+L+VG +A L++YFS++G V A V ++ TG +G+GF+ FA+
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFAN 56
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/78 (24%), Positives = 35/78 (44%)
Frame = +3
Query: 231 TARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAA 410
T+R +++VG L+ + + YF +FG V+ D T +G+GF+ + S +
Sbjct: 116 TSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVE 175
Query: 411 DATNKQIHTLEGFNLSVQ 464
H L + V+
Sbjct: 176 VVMQSNFHELSDKRVEVK 193
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGP-VQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
++VG+L+ V L E FS+ P V++A+VV D +TG SKGYGF+ F + A
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 255
Score = 34.7 bits (76), Expect = 0.057
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGP--VQSARVVFDRSTGLSKGYGFIEFASPSAA 407
++VG+L + L F+ + S +V+ +++ GLS+GYGF+EF S A
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVA 157
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGP-VQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
++VG+L+ V L E FS+ P V++A+VV D +TG SKGYGF+ F + A
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 255
Score = 34.7 bits (76), Expect = 0.057
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGP--VQSARVVFDRSTGLSKGYGFIEFASPSAA 407
++VG+L + L F+ + S +V+ +++ GLS+GYGF+EF S A
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVA 157
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/66 (28%), Positives = 35/66 (53%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 428
++VG L +V L++ F++FG + S ++ + KG GF++F + A +A K
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKI------PVGKGCGFVQFVNRPNAEEALEKL 359
Query: 429 IHTLEG 446
T+ G
Sbjct: 360 NGTVIG 365
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/57 (38%), Positives = 34/57 (59%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
RL+ G+L V L + F++F A+V+ D+ TG +KGYGF+ F +P+ A A
Sbjct: 138 RLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAA 194
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
++V L W H L+ F +G + VV D+ TG +KG+GF+ F + A A
Sbjct: 165 IFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAA 220
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 45.6 bits (103), Expect = 3e-05
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVV-FDRSTGLSKGYGFIEFASPSAAADATNK 425
L+ GNL++ + + +F + G V R+ FD G KGYG IEFASP A A
Sbjct: 386 LFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFD--DGSFKGYGHIEFASPEEAQKALEM 443
Query: 426 QIHTLEGFNLSVQLQN 473
L G ++ + L N
Sbjct: 444 NGKLLLGRDVRLDLAN 459
Score = 36.7 bits (81), Expect = 0.014
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Frame = +3
Query: 234 ARAARLYVGNLAWTVGH----RQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFAS 395
+++ +YV + ++G ++LR +FS+ G V V DR TG S+G+ +I+ S
Sbjct: 476 SQSRTIYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLTS 533
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/67 (31%), Positives = 37/67 (55%)
Frame = +3
Query: 243 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATN 422
+ +++G L VG LR+ + G + R++ DR +G SKGY F+ F + A A
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAI- 174
Query: 423 KQIHTLE 443
+++H+ E
Sbjct: 175 EELHSKE 181
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/55 (40%), Positives = 33/55 (60%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAAD 413
L+VG+L + L FS G V S +V+ ++ T S+GYGF+EF S +AA +
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEE 164
Score = 44.4 bits (100), Expect = 7e-05
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGP-VQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
++VG+L+ V L E FS P V+SA+VV D +TG SKGYGF+ F + + A
Sbjct: 204 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRA 260
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/70 (35%), Positives = 36/70 (51%)
Frame = +3
Query: 243 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATN 422
A ++VG + V LR+ FSQFG V S ++ + KG GF++FA +A DA
Sbjct: 321 ATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKI------PVGKGCGFVQFADRKSAEDAIE 374
Query: 423 KQIHTLEGFN 452
T+ G N
Sbjct: 375 SLNGTVIGKN 384
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 45.2 bits (102), Expect = 4e-05
Identities = 26/65 (40%), Positives = 34/65 (52%)
Frame = +3
Query: 222 MASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPS 401
MA + +YV NL TV L FSQ+G V S V+ D G S+G+GF+ F +P
Sbjct: 195 MAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPE 253
Query: 402 AAADA 416
A A
Sbjct: 254 NAKKA 258
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/53 (39%), Positives = 34/53 (64%)
Frame = +3
Query: 237 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFAS 395
R + LYV NL+ ++ +LRE F +G + SA+V+ G SKG+GF+ F++
Sbjct: 302 RWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMC-HENGRSKGFGFVCFSN 353
Score = 40.7 bits (91), Expect = 9e-04
Identities = 22/58 (37%), Positives = 31/58 (53%)
Frame = +3
Query: 243 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
A LYV NL ++ L F FG + S +VV G SKG+GF++F + +A A
Sbjct: 112 ANLYVKNLDSSITSSCLERMFCPFGSILSCKVV--EENGQSKGFGFVQFDTEQSAVSA 167
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/62 (35%), Positives = 34/62 (54%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 428
L+V +L+ V L+E F FG V + DR+ L +G+G++EF A ADA Q
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEF---KARADAEKAQ 156
Query: 429 IH 434
++
Sbjct: 157 LY 158
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/62 (35%), Positives = 34/62 (54%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 428
L+V +L+ V L+E F FG V + DR+ L +G+G++EF A ADA Q
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEF---KARADAEKAQ 156
Query: 429 IH 434
++
Sbjct: 157 LY 158
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 44.8 bits (101), Expect = 5e-05
Identities = 23/57 (40%), Positives = 29/57 (50%)
Frame = +3
Query: 255 VGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
V NL+ L E F FG V V D+ TG+S+G+GF+ F S A A NK
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINK 273
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 44.8 bits (101), Expect = 5e-05
Identities = 23/56 (41%), Positives = 33/56 (58%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
L+VG+L + L FS V S +V+ ++ T S+GYGF+EF S SAA +A
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEA 176
Score = 44.0 bits (99), Expect = 9e-05
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFS-QFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
++VG+LA V L E F+ ++ V+ A+VV D +TG SKGYGF+ F + + A
Sbjct: 215 IFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRA 271
Score = 34.7 bits (76), Expect = 0.057
Identities = 22/68 (32%), Positives = 34/68 (50%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 428
++VG L V L + FS FG V S ++ + KG GF++FA+ +A +A
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSVKI------PVGKGCGFVQFANRQSAEEAIGNL 382
Query: 429 IHTLEGFN 452
T+ G N
Sbjct: 383 NGTVIGKN 390
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 44.0 bits (99), Expect = 9e-05
Identities = 22/64 (34%), Positives = 35/64 (54%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 428
L+VG L+ LRE S++G +++ R+V TG S+GYGF+E+ + A
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
Query: 429 IHTL 440
H+L
Sbjct: 126 HHSL 129
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 44.0 bits (99), Expect = 9e-05
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
+++V L W L F +G ++ VV D++TG +KG+GF+ F + A +A
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEA 161
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 44.0 bits (99), Expect = 9e-05
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
+++V L W L F +G ++ VV D++TG +KG+GF+ F + A +A
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEA 161
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/55 (32%), Positives = 31/55 (56%)
Frame = +3
Query: 252 YVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
+V L + L + FS+FG V +++++DR TG S+ +GF+ F + DA
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDA 64
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Frame = +3
Query: 222 MASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPS 401
++ + +L+VG++ T ++R YF Q G V ++ D+ TG +G F+++A+ S
Sbjct: 113 VSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYAT-S 171
Query: 402 AAADATNKQIH---TLEGFNLSVQLQ 470
AD + +H TL G VQ++
Sbjct: 172 KDADRAIRALHNQITLPGGTGPVQVR 197
Score = 35.5 bits (78), Expect = 0.033
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATN- 422
+L+VG+L +++ E F QFG V+ ++ D S+G GF++++S A A +
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDG 270
Query: 423 -KQIHTLEGFN 452
+T+ G N
Sbjct: 271 LNGTYTMRGCN 281
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Frame = +3
Query: 222 MASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPS 401
++ + +L+VG++ T ++R YF Q G V ++ D+ TG +G F+++A+ S
Sbjct: 113 VSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYAT-S 171
Query: 402 AAADATNKQIH---TLEGFNLSVQLQ 470
AD + +H TL G VQ++
Sbjct: 172 KDADRAIRALHNQITLPGGTGPVQVR 197
Score = 35.5 bits (78), Expect = 0.033
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATN- 422
+L+VG+L +++ E F QFG V+ ++ D S+G GF++++S A A +
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDG 270
Query: 423 -KQIHTLEGFN 452
+T+ G N
Sbjct: 271 LNGTYTMRGCN 281
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
R+Y+GNLAW R +R+ FS + S R+ ++ TG KGY ++F + A A
Sbjct: 263 RVYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAHVDFKDSVSVAIA 318
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/57 (26%), Positives = 22/57 (38%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
+LYVG + + ++R YF G + G G FI F + A A
Sbjct: 162 KLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRA 218
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/57 (38%), Positives = 28/57 (49%)
Frame = +3
Query: 255 VGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
V NL+ L E F FG V V D+ T +S+G+GF+ F S A A NK
Sbjct: 178 VTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINK 234
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 42.7 bits (96), Expect = 2e-04
Identities = 17/60 (28%), Positives = 33/60 (55%)
Frame = +3
Query: 237 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
+ +L++ L++ + LR F FG + +++ D+ + SKGY F+E+ + AA A
Sbjct: 280 KTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTA 339
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/55 (43%), Positives = 29/55 (52%)
Frame = +3
Query: 243 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 407
A +YVG L + L E F Q GPV + V DR T L + YGFIE+ S A
Sbjct: 25 ATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDA 79
Score = 41.9 bits (94), Expect = 4e-04
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = +3
Query: 243 ARLYVGNLAWTVGHRQLREYFSQFGPVQS-ARVVFDRSTGLSKGYGFIEFASPSAAADAT 419
A L++GNL V + L + FS FG + S +++ D TG S+G+GFI + S +A+
Sbjct: 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDS----FEAS 167
Query: 420 NKQIHTLEGFNLS 458
+ I ++ G LS
Sbjct: 168 DAAIESMTGQYLS 180
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/56 (37%), Positives = 33/56 (58%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
+YVG L + + +R FS +G V + ++V DRS K YGF+ F++ +A DA
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSV-RGKCYGFVTFSNRRSADDA 63
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAA 410
L+VG L W ++ SQ+G V+ + +R +G SKGY +EF +AAA
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAA 257
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/66 (30%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFAS---PSAAADAT 419
L+V + +V +L++ FS+FG V + +++ + T S GYG++ F S +A +A
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAM 119
Query: 420 NKQIHT 437
N ++H+
Sbjct: 120 NGKVHS 125
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 41.5 bits (93), Expect = 5e-04
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFAS-PSAAADATNK 425
LYV NL +++ + + FS FG V V+ DR T S+G F+ + S AA A +
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 426 QIHTLEGFNLSVQL 467
L G L+V +
Sbjct: 119 DAKILNGRKLTVSI 132
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 41.5 bits (93), Expect = 5e-04
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Frame = +3
Query: 231 TARAARLYVGNLAWTVGHRQLREYFSQFGPVQS----ARVVFDRSTGLSKGYGFIEFASP 398
T+ ++VG+L+ V L + FS F S ARV++D+ TG S+G+GF+ F +
Sbjct: 144 TSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQ 203
Query: 399 SAAADATNK 425
A A N+
Sbjct: 204 QDAQTAINE 212
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVV-FDRSTGLSKGYGFIEFASPSAAADA 416
+Y GN+ V L+E F+ GP++S +++ D+S+ YGF+ + A+ A
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS-----YGFVHYFDRRCASMA 116
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/65 (32%), Positives = 36/65 (55%)
Frame = +3
Query: 231 TARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAA 410
T+ ++VG+L+ V L FS + ARV++D+ TG S+G+GF+ F + A
Sbjct: 135 TSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQ 194
Query: 411 DATNK 425
A ++
Sbjct: 195 TAIDE 199
Score = 31.5 bits (68), Expect = 0.53
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +3
Query: 228 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 407
+ A+ +YVGNLA V L +F G A V+ + KG+GF+ +++ A
Sbjct: 255 NNAQYTTVYVGNLAPEVSQVDLHRHFHSLG----AGVIEEVRVQRDKGFGFVRYSTHVEA 310
Query: 408 A 410
A
Sbjct: 311 A 311
Score = 30.7 bits (66), Expect = 0.93
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +3
Query: 228 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 389
ST R+ +YVGN+ V L+E F+ GPV+S +++ + YGF+ +
Sbjct: 51 STCRS--VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKS----SYGFVHY 98
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 41.1 bits (92), Expect = 7e-04
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = +3
Query: 240 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 407
A+++ V NL ++ L+ FS FG + +++ D + SKGY FI+F S A
Sbjct: 39 ASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDA 94
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +3
Query: 219 VMASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 389
V A L++ N+ G ++L F FG V SA+V D++TG+SK +G + F
Sbjct: 340 VQTEGPEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGKLSF 396
Score = 31.5 bits (68), Expect = 0.53
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = +3
Query: 240 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 419
+ +L+VG + + QL F +F V ++ D+ T S+G F+ S A
Sbjct: 17 SVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLV 76
Query: 420 N--KQIHTLEGFNLSVQLQ 470
N TL G N +Q++
Sbjct: 77 NACHNKKTLPGANSLLQVK 95
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 40.7 bits (91), Expect = 9e-04
Identities = 19/56 (33%), Positives = 32/56 (57%)
Frame = +3
Query: 243 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAA 410
A L+VG+L W +L ++G V+ + ++++G SKGY +EF P AA+
Sbjct: 234 AFLFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAAS 289
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 40.7 bits (91), Expect = 9e-04
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGF 380
R++VG L + Q+RE FG ++ +V DR TG SKGY F
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAF 404
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 40.7 bits (91), Expect = 9e-04
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGF 380
R++VG L + Q+RE FG ++ +V DR TG SKGY F
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAF 404
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 40.7 bits (91), Expect = 9e-04
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGF 380
R++VG L + Q+RE FG ++ +V DR TG SKGY F
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAF 404
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 40.7 bits (91), Expect = 9e-04
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Frame = +3
Query: 231 TARAAR-LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 407
++R++R +YVGNL + R++ + FS++GPV + + GY F+EF A
Sbjct: 2 SSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDA 58
Query: 408 ADAT-NKQIHTLEGFNLSVQL 467
DA + + +G +L V+L
Sbjct: 59 DDAIYGRDGYDFDGHHLRVEL 79
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 40.7 bits (91), Expect = 9e-04
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Frame = +3
Query: 231 TARAAR-LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 407
++R++R +YVGNL + R++ + FS++GPV + + GY F+EF A
Sbjct: 2 SSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDA 58
Query: 408 ADAT-NKQIHTLEGFNLSVQL 467
DA + + +G +L V+L
Sbjct: 59 DDAIYGRDGYDFDGHHLRVEL 79
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYF-SQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
L+V NLA+ + L+E+F + G V S V+F + S GYGF+ F + A A
Sbjct: 191 LFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAA 247
Score = 33.9 bits (74), Expect = 0.099
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
RL N+ WT +R F ++G V + + ++G FIE ASP AA A
Sbjct: 95 RLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKER-NRGLVFIEMASPEEAATA 150
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +3
Query: 225 ASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 389
A +A +YVG + + + L FSQ+G + ++ D+ TG SKG+ F+ +
Sbjct: 30 AKYKNSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAY 84
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Frame = +3
Query: 231 TARAAR-LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 407
++R++R +YVGNL + R++ + FS++GPV + + GY F+EF A
Sbjct: 2 SSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDA 58
Query: 408 ADATN-KQIHTLEGFNLSVQL 467
DA + + + +G L V+L
Sbjct: 59 EDAIHGRDGYDFDGHRLRVEL 79
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Frame = +3
Query: 231 TARAAR-LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 407
++R++R +YVGNL + R++ + FS++GPV + + GY F+EF A
Sbjct: 2 SSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDA 58
Query: 408 ADATN-KQIHTLEGFNLSVQL 467
DA + + + +G L V+L
Sbjct: 59 EDAIHGRDGYDFDGHRLRVEL 79
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Frame = +3
Query: 231 TARAAR-LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 407
++R++R +YVGNL + R++ + FS++GPV + + GY F+EF A
Sbjct: 2 SSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDA 58
Query: 408 ADATN-KQIHTLEGFNLSVQL 467
DA + + + +G L V+L
Sbjct: 59 EDAIHGRDGYDFDGHRLRVEL 79
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/69 (26%), Positives = 38/69 (55%)
Frame = +3
Query: 228 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 407
S +A + V L+ L + +++GP+ RV+ ++++G+S+G+ FI+F + AA
Sbjct: 293 SATPSATVVVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVDAA 352
Query: 408 ADATNKQIH 434
++ H
Sbjct: 353 RTMMDRIEH 361
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/66 (28%), Positives = 34/66 (51%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 428
L + NL LR+ F +FGP++ + + TG +G+GF+++ AA+A +
Sbjct: 49 LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRM 108
Query: 429 IHTLEG 446
H + G
Sbjct: 109 NHKVIG 114
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVV-FDRSTGLSKGYGFIEFASPSAAADATN 422
+++VGNL + + E+F QFGP+++ ++ + G+GFI +A+ +A A
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAVE 225
Query: 423 KQIHTLEGFNLSVQLQN 473
G L+V+L +
Sbjct: 226 FDGVEFHGRILTVKLDD 242
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +3
Query: 234 ARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAAD 413
A + ++V N+ + L +F++FG V A +V D +TG G +IEF AA +
Sbjct: 513 ASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAEN 572
Query: 414 A 416
A
Sbjct: 573 A 573
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/51 (33%), Positives = 32/51 (62%)
Frame = +3
Query: 240 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFA 392
AA + V L +++ + QL E FS+ GPV+ +V ++ + +G+ F++FA
Sbjct: 19 AATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFA 69
Score = 35.1 bits (77), Expect = 0.043
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +3
Query: 228 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 407
S A+ +L + NL + ++ FS G V + + TGL KG+ F++F A
Sbjct: 326 SKAQKWKLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDA 385
Query: 408 ADATNK 425
A+A K
Sbjct: 386 ANAIKK 391
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/56 (32%), Positives = 32/56 (57%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
L+V + +V +L++ FS+FG V + +++ + T S GYG++ F S A A
Sbjct: 79 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSA 134
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 38.7 bits (86), Expect = 0.003
Identities = 27/70 (38%), Positives = 35/70 (50%)
Frame = +3
Query: 243 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATN 422
+R+YVGNL V R+L + F FG V+S V GY F++F P A DA
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRAFGVVRSVWV-----ARRPPGYAFLDFEDPRDARDA-- 54
Query: 423 KQIHTLEGFN 452
I L+G N
Sbjct: 55 --IRALDGKN 62
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
L V N+ +LRE F +FGPV+ + D +G +G+ F+EF A +A
Sbjct: 49 LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEA 104
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/66 (25%), Positives = 32/66 (48%)
Frame = +3
Query: 219 VMASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASP 398
++A + +Y+G + L+ + G V R++ ++ +G KGY F+ F S
Sbjct: 84 LLALPPHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSK 143
Query: 399 SAAADA 416
AA+A
Sbjct: 144 DLAAEA 149
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/71 (30%), Positives = 36/71 (50%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 428
L+V NL ++ + +F G V R++ + S G G+GF+EFAS + A A K
Sbjct: 249 LFVANLRDSIQISDIINFFKDVGEVVHVRLIVN-SQGKHAGWGFVEFASANEAEKALVKN 307
Query: 429 IHTLEGFNLSV 461
L + +S+
Sbjct: 308 GEYLHNYKISL 318
Score = 31.5 bits (68), Expect = 0.53
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +3
Query: 255 VGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 428
V NL+ ++ +F+ V S R+V + G GYGF+EFAS A A ++
Sbjct: 162 VSNLSPLTKIAHIKGFFNGVAQVVSVRLVVNHE-GKHVGYGFVEFASAYGANKALEEK 218
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 38.7 bits (86), Expect = 0.003
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 428
LYV L+ V R L ++F++ G V +V D T S+G+GFI S A
Sbjct: 47 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 106
Query: 429 IHT-LEGFNLSVQ 464
H+ L+G ++V+
Sbjct: 107 DHSVLQGRVITVE 119
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 38.7 bits (86), Expect = 0.003
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 428
LYV L+ V R L ++F++ G V +V D T S+G+GFI S A
Sbjct: 77 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 136
Query: 429 IHT-LEGFNLSVQ 464
H+ L+G ++V+
Sbjct: 137 DHSVLQGRVITVE 149
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 389
L+V L + +++ F +GP++ +V D+ T KGY FIE+
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEY 186
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
L+ NL++ + + +F + G V R +R G +G+G +EFAS A A
Sbjct: 299 LFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKA 354
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +3
Query: 291 LREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFA 392
LRE+FS G +++ V DR TG SKG ++EF+
Sbjct: 421 LREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFS 454
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 37.9 bits (84), Expect = 0.006
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +3
Query: 225 ASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSA 404
+S +LY+ NL + V + ++E FS+ G ++ + +DRS G SKG + F+
Sbjct: 102 SSIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRS-GRSKGTAEVVFSRRGD 160
Query: 405 AADATNKQIHT-LEGFNLSVQL 467
A A + + L+G + +++
Sbjct: 161 ALAAVKRYNNVQLDGKLMKIEI 182
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +3
Query: 225 ASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSA 404
+S+ +LYV L++ LR+ F QFG + +V D+ KG+ F+ + +
Sbjct: 71 SSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEE 130
Query: 405 AADA 416
A A
Sbjct: 131 AMKA 134
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/74 (27%), Positives = 34/74 (45%)
Frame = +3
Query: 240 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 419
A +YVGN+ + +++ +F G V ++ D+ G KG+ ++EF A +A
Sbjct: 88 ARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKF-GQPKGFAYVEFVEVEAVQEAL 146
Query: 420 NKQIHTLEGFNLSV 461
L G L V
Sbjct: 147 QLNESELHGRQLKV 160
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/74 (27%), Positives = 34/74 (45%)
Frame = +3
Query: 240 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 419
A +YVGN+ + +++ +F G V ++ D+ G KG+ ++EF A +A
Sbjct: 88 ARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKF-GQPKGFAYVEFVEVEAVQEAL 146
Query: 420 NKQIHTLEGFNLSV 461
L G L V
Sbjct: 147 QLNESELHGRQLKV 160
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 36.7 bits (81), Expect = 0.014
Identities = 19/74 (25%), Positives = 35/74 (47%)
Frame = +3
Query: 240 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 419
A ++VGN+ + +++++F G V ++ D+ G KG+ ++EF A +A
Sbjct: 91 ARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKF-GQPKGFAYVEFVEVEAVQEAL 149
Query: 420 NKQIHTLEGFNLSV 461
L G L V
Sbjct: 150 QLNESELHGRQLKV 163
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 36.7 bits (81), Expect = 0.014
Identities = 21/67 (31%), Positives = 34/67 (50%)
Frame = +3
Query: 225 ASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSA 404
A +LY+ NL + V + ++E F++ G ++ V FDRS G SKG + ++
Sbjct: 80 AGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRS-GRSKGTAEVVYSRRGD 138
Query: 405 AADATNK 425
A A K
Sbjct: 139 ALAAVKK 145
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 36.7 bits (81), Expect = 0.014
Identities = 21/67 (31%), Positives = 34/67 (50%)
Frame = +3
Query: 225 ASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSA 404
A +LY+ NL + V + ++E F++ G ++ V FDRS G SKG + ++
Sbjct: 16 AGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRS-GRSKGTAEVVYSRRGD 74
Query: 405 AADATNK 425
A A K
Sbjct: 75 ALAAVKK 81
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 36.7 bits (81), Expect = 0.014
Identities = 21/67 (31%), Positives = 34/67 (50%)
Frame = +3
Query: 225 ASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSA 404
A +LY+ NL + V + ++E F++ G ++ V FDRS G SKG + ++
Sbjct: 82 AGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRS-GRSKGTAEVVYSRRGD 140
Query: 405 AADATNK 425
A A K
Sbjct: 141 ALAAVKK 147
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 36.7 bits (81), Expect = 0.014
Identities = 24/64 (37%), Positives = 30/64 (46%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 428
L+V L L FS+FG V SA V+ D TG S Y FIEF + + A K
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKM 304
Query: 429 IHTL 440
+ L
Sbjct: 305 DNAL 308
>At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
Length = 458
Score = 36.3 bits (80), Expect = 0.019
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +3
Query: 228 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 407
+ A +YV +L + L F QFG + + + GL YGF+EF AA
Sbjct: 314 AVAEGTSIYVRHLPFNANIDMLEAEFKQFGAITNGGIQVINQRGLGYPYGFVEFEEADAA 373
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 35.9 bits (79), Expect = 0.025
Identities = 23/66 (34%), Positives = 34/66 (51%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 428
L+V NL+ + ++F+ G V S R++ + G GYGF+EFAS AD T K
Sbjct: 246 LFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHE-GKHVGYGFVEFAS----ADETKKA 300
Query: 429 IHTLEG 446
+ G
Sbjct: 301 LENKNG 306
Score = 35.1 bits (77), Expect = 0.043
Identities = 20/70 (28%), Positives = 35/70 (50%)
Frame = +3
Query: 219 VMASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASP 398
V + R L+V NL + + ++F + G V +++ + G G GF+EFAS
Sbjct: 119 VKEAAVREKTLFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLK-GKLVGCGFVEFASV 177
Query: 399 SAAADATNKQ 428
+ A +A K+
Sbjct: 178 NEAEEALQKK 187
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +3
Query: 237 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
R L+V NL+ + ++F V R++ + G G GF+EFAS + A A
Sbjct: 487 RKKTLFVANLSPRTKISHIIKFFKDVAEVVRVRLIVNHR-GEHVGCGFVEFASVNEAQKA 545
Query: 417 TNK 425
K
Sbjct: 546 LQK 548
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 35.9 bits (79), Expect = 0.025
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
RLYVG L+ R L FS++G V R + + Y F+EF+ P A DA
Sbjct: 12 RLYVGRLSSRTRTRDLERLFSRYGRV--------RDVDMKRDYAFVEFSDPRDADDA 60
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 35.5 bits (78), Expect = 0.033
Identities = 21/57 (36%), Positives = 27/57 (47%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
RLYVG L+ R L FS++G V R + + Y F+EF P A DA
Sbjct: 12 RLYVGRLSSRTRTRDLERLFSRYGRV--------RDVDMKRDYAFVEFGDPRDADDA 60
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 35.5 bits (78), Expect = 0.033
Identities = 17/66 (25%), Positives = 35/66 (53%)
Frame = +3
Query: 219 VMASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASP 398
++ S + ++ L+V ++++ L + FSQ+G V V+ D+ KG+ ++ F+S
Sbjct: 13 LLFSRSFSSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSK 72
Query: 399 SAAADA 416
A A
Sbjct: 73 EEAEKA 78
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 34.7 bits (76), Expect = 0.057
Identities = 17/71 (23%), Positives = 34/71 (47%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 428
+YVGN+ + +++++F G V ++ D+ G KG+ ++EF A ++
Sbjct: 105 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEVEAVQNSLILN 163
Query: 429 IHTLEGFNLSV 461
L G + V
Sbjct: 164 ESELHGRQIKV 174
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 34.7 bits (76), Expect = 0.057
Identities = 22/56 (39%), Positives = 28/56 (50%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
LY+ NL V L FS FG V + + D G S+G+ FIEF S +A A
Sbjct: 19 LYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKD-FRGESRGFAFIEFESADSAGRA 73
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 34.7 bits (76), Expect = 0.057
Identities = 21/58 (36%), Positives = 29/58 (50%)
Frame = +3
Query: 243 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
+R+YVGNL V R+L + F FG ++S V GY F++F A DA
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRSFGVIRSVWV-----ARRPPGYAFLDFEDSRDARDA 54
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 34.7 bits (76), Expect = 0.057
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT-NK 425
+YVGNL + ++ + F ++GP+ + + GY F+EF P A DA +
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDL---KIPPRPPGYAFVEFEDPRDADDAIYGR 65
Query: 426 QIHTLEGFNLSVQL 467
+ +G L V++
Sbjct: 66 DGYDFDGCRLRVEI 79
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 34.3 bits (75), Expect = 0.075
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 428
+YVGN + H L FS+FG V + + GY F+ F A DA +
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRV--------KRVDMKSGYAFVYFEDERDAEDAIRRT 55
Query: 429 IHTLEGF 449
+T G+
Sbjct: 56 DNTTFGY 62
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 33.9 bits (74), Expect = 0.099
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +3
Query: 237 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVF---DRSTGLSKGYGFIEF 389
+ LYVGNL+ V L F +FGP+ S ++++ D + GF+ F
Sbjct: 177 QTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSF 230
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFAS 395
LYV L+ V + L +F++ G V S +V + T +S+G+ F+ +S
Sbjct: 74 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSS 122
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFAS 395
LYV L+ V + L +F++ G V S +V + T +S+G+ F+ +S
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSS 121
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +3
Query: 297 EYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 428
++F+ G V S R++ + GYGF+EFASP A A K+
Sbjct: 700 DFFNDVGEVVSVRLIVSPESK-HVGYGFVEFASPCLANMALEKK 742
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +3
Query: 234 ARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAAD 413
+R LYV L + ++F G V S ++ R+ GL GF+EFAS + A
Sbjct: 561 SRKKTLYVCCLPRDTKMPDIIDFFKDVGQVVSVQLTTKRN-GLRLSTGFVEFASANEAKK 619
Query: 414 A 416
A
Sbjct: 620 A 620
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
++VG+L L++ F G V R++ + T SKG F+ FA+ A A +
Sbjct: 216 IFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKE 274
Score = 33.1 bits (72), Expect = 0.17
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGP--VQSARVVFD-RSTGLSKGYGFIEFASPSAAADAT 419
L+VGN+ LRE +G + +V D + +++GY F+EF+S S A DA
Sbjct: 296 LFVGNICKIWTPEALREKLKHYGVENMDDITLVEDSNNVNMNRGYAFLEFSSRSDAMDAH 355
Query: 420 NKQI 431
+ +
Sbjct: 356 KRLV 359
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 33.1 bits (72), Expect = 0.17
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
R+YVGNL V R+L + F FG +++ V GY F+EF A DA
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWV-----ARRPPGYAFLEFDDERDALDA 54
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 33.1 bits (72), Expect = 0.17
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
R+YVGNL V R+L + F FG +++ V GY F+EF A DA
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWV-----ARRPPGYAFLEFDDERDALDA 54
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 31.9 bits (69), Expect = 0.40
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +3
Query: 222 MASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPS 401
M+ T+ +Y+GN+ V R L + Q G V + D+ T KG+ F E+ +
Sbjct: 1 MSGTSNCT-VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEE 59
Query: 402 AA 407
A
Sbjct: 60 IA 61
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 31.5 bits (68), Expect = 0.53
Identities = 20/65 (30%), Positives = 32/65 (49%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
RL+V NL V + +RE FS+ G V+ + +D++ G G + + S A A K
Sbjct: 94 RLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKN-GRPSGTAEVVYPRRSDAFQALKK 152
Query: 426 QIHTL 440
+ L
Sbjct: 153 YNNVL 157
>At1g79100.1 68414.m09223 arginine/serine-rich protein-related
similar to arginine/serine-rich protein [Arabidopsis
thaliana] GI:6601502
Length = 70
Score = 31.5 bits (68), Expect = 0.53
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +3
Query: 288 QLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQIHTLEGF 449
++R + FG + ++ DR+ LS+G ++EF + ADA Q++ G+
Sbjct: 3 KIRVFRGDFGEIIHVQLAIDRAANLSRGDAYVEF--KAKIADAEKPQLYMDGGY 54
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 303 FSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
F FG +++ + DR +G KGY IE+ A A
Sbjct: 115 FGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSA 152
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 30.7 bits (66), Expect = 0.93
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = +3
Query: 303 FSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQIHTLEGFNLSVQ 464
F QFGP++ R+ + Y F+EF AA A ++G V+
Sbjct: 570 FKQFGPIKKGRIRVINPANSNYWYAFVEFEEADAAKRAIQASPLNVDGHTTYVE 623
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/70 (28%), Positives = 28/70 (40%)
Frame = +3
Query: 234 ARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAAD 413
A A + V NL + F QFG ++ V S YGF+EF +AA
Sbjct: 1073 ANNAAICVKNLPLNATIALVENAFKQFGEIRRGGVEVRNKRSFS--YGFVEFKEENAAQR 1130
Query: 414 ATNKQIHTLE 443
A T++
Sbjct: 1131 AIKASPVTID 1140
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 30.7 bits (66), Expect = 0.93
Identities = 18/41 (43%), Positives = 20/41 (48%)
Frame = +3
Query: 222 MASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVF 344
MAST YVGNL L+ FSQFG V + V F
Sbjct: 1 MASTNVEFTCYVGNLESDTEENDLKNAFSQFGDVIHSNVRF 41
>At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 459
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
+YV NL + QL E F FG ++ + RS +GF+EF + S A
Sbjct: 295 IYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQV-RSNKQGFCFGFVEFETSSGKQSA 349
>At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 399
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 297 EYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASP 398
+YFS FGPVQ R+ + + + +GF+ F P
Sbjct: 174 DYFSTFGPVQDVRIPYQQ----KRMFGFVTFMYP 203
>At5g66010.1 68418.m08312 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative similar to Heterogeneous
nuclear ribonucleoprotein SP|P55795, SP|P31943,
SP|P52597 {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM) domain
Length = 289
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 425
L + L ++V Q+ E+FS + +Q V R G + G F+EF + A A K
Sbjct: 202 LKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAK 260
>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 460
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
+YV NL + QL E F FG ++ + + +GF+EF + S A
Sbjct: 295 IYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQQGFCFGFVEFETSSGKQSA 350
>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
Length = 947
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 237 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRS 353
+ LYV NL+ V L F +FGP+ S ++++ R+
Sbjct: 185 QTTNLYVVNLSSKVDENFLLRTFGRFGPIASVKIMWPRT 223
>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM), PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 540
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 300 YFSQFGPVQSARVVFDRSTGLSKGYGFIEFASP 398
YFS FGPVQ R+ + + + +GF+ F P
Sbjct: 278 YFSTFGPVQDVRIPYQQ----KRMFGFVTFVYP 306
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 29.5 bits (63), Expect = 2.1
Identities = 24/70 (34%), Positives = 34/70 (48%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 428
L+VGNL + R+L + F +FG ++S RS Y F+ F A A
Sbjct: 25 LWVGNLPHGILERELADRFLRFGELESLAFQPGRS------YAFVNFNHDEDAFAA---- 74
Query: 429 IHTLEGFNLS 458
I +L+GF LS
Sbjct: 75 IESLQGFPLS 84
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +3
Query: 291 LREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQIHTLEGFNLSV 461
L +YFS FG + V TG S GY +I+ A A H + G++L V
Sbjct: 254 LSKYFSSFGEITRVFVPPSHGTGGSLGYAYIDL--KEGAEKALELGRHDVGGWDLVV 308
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +3
Query: 285 RQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
+ LR+ F+ F AR++ D+ T KG+GFI F S A A
Sbjct: 85 QSLRQLFAPF-----ARLIKDQQTQRPKGFGFITFESEDDAQKA 123
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGY 374
L+VG + V L E FS+FG ++ R + +R T Y
Sbjct: 252 LWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTAFIDYY 293
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA-TNK 425
+YVGNL + ++ + F ++G + + + Y F+EF A DA +
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIEL---KVPPRPPCYCFVEFEHSRDAEDAIKGR 65
Query: 426 QIHTLEGFNLSVQL 467
+ L+G L V+L
Sbjct: 66 DGYNLDGCRLRVEL 79
>At3g48840.1 68416.m05334 RNA recognition motif (RRM)-containing
protein
Length = 144
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +3
Query: 300 YFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
+F G V S R++ D G G GF+EFAS A A
Sbjct: 14 FFRDVGEVVSVRLIVDHR-GKHVGCGFVEFASAYKAKKA 51
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3
Query: 249 LYVGNLAWTVGHRQLREYFSQFGPVQSARV 338
++VGNL V + + + FS+FG V+S R+
Sbjct: 173 VFVGNLPLKVKKKVILKEFSKFGEVESVRI 202
>At2g33440.1 68415.m04099 splicing factor family protein similar to
Splicing factor U2AF 65 kDa subunit (U2 snRNP auxiliary
factor large subunit) {Homo sapiens} SP|P26368, {Mus
musculus} SP|P26369; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 247
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = +3
Query: 246 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 416
++++G + + L E S FGP+++ R F + L++ F+E+ S A
Sbjct: 41 KIFIGGFSKAISSEMLMEIVSVFGPLKAYR--FVSNNDLNQRCAFLEYTDGSVTLKA 95
>At4g39290.1 68417.m05564 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 365
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 146 KLWC*LQGFDRRTLLTPVGNSI-IIGYG 226
K+W L+GF RR+++ P G + ++ YG
Sbjct: 278 KIWKNLKGFVRRSIMNPRGEGVKMVNYG 305
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,786,402
Number of Sequences: 28952
Number of extensions: 266610
Number of successful extensions: 1007
Number of sequences better than 10.0: 204
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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