Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0394
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    26   4.4  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   5.8  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    25   7.7  

>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 319 FKFTTVLTAIHLFLYIHLDV 260
           F+ T  L  IHL  ++HLDV
Sbjct: 399 FQLTQALNFIHLLEFVHLDV 418


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 71   VVSLSEAHIGIGMLADGSFL*NFNS*DFIVGSN*KFKVVTRICH 202
            +  + EAH+GIG +A    L    S DF +G   KF +    CH
Sbjct: 1248 IAMIQEAHVGIG-IAGREGLQAARSSDFSIG-RFKFLIKLLFCH 1289


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 8/18 (44%), Positives = 16/18 (88%)
 Frame = -2

Query: 320  FQVYNSFDSNTFIFVYSF 267
            +Q+YN+FD+N ++F Y++
Sbjct: 1087 YQIYNNFDAN-YLFDYTY 1103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,237,086
Number of Sequences: 5004
Number of extensions: 45573
Number of successful extensions: 101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)