Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0394
         (564 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1221 + 9873399-9873869,9873969-9874033,9874226-9874655,987...    28   4.5  
03_05_0124 + 21034963-21035181,21035618-21037466,21037485-210381...    27   7.8  

>01_01_1221 +
           9873399-9873869,9873969-9874033,9874226-9874655,
           9874656-9874754,9874977-9875240
          Length = 442

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 16  LSLQIGPLPEIPGYTRYGCRFVVRGTYRHRHVG*WEFPLKFQQLR 150
           L+L +G L +   YT +  +F+   TY    +G W +   F+ L+
Sbjct: 190 LALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIFRHLK 234


>03_05_0124 +
           21034963-21035181,21035618-21037466,21037485-21038194,
           21038426-21038470,21038557-21038745
          Length = 1003

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 326 KIFQVYNSFDSNTFIFVYSFGCLPRCDQNMFSY 228
           +IFQV NS D N   F   F    RC   +FS+
Sbjct: 521 RIFQVVNSMDDNRRYFSSFFKNNRRCFSKLFSH 553


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,066,117
Number of Sequences: 37544
Number of extensions: 245457
Number of successful extensions: 431
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)