Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0394
         (564 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2430| Best HMM Match : 7tm_1 (HMM E-Value=1e-06)                    33   0.12 
SB_27534| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_47334| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_2625| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  
SB_45144| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-38)                 27   8.0  
SB_6544| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.0  

>SB_2430| Best HMM Match : 7tm_1 (HMM E-Value=1e-06)
          Length = 439

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 21/77 (27%), Positives = 40/77 (51%)
 Frame = -3

Query: 343 SCYFNEKFFKFTTVLTAIHLFLYIHLDVCLAVIKICFRIFVYLTRIRMANTSDNFKFSIR 164
           +C  N  F +   VL   H ++ + ++ CLAVI IC+ + +++ ++R   T DN + S +
Sbjct: 124 TCSLNSLFLRRFEVL--FHWYIMLGINACLAVITICY-VSIWI-KMRFGKTFDNEQASRK 179

Query: 163 AHNKVLTVEISKETPIS 113
                 T+ I   T ++
Sbjct: 180 NAKLAKTLSIVTLTTLA 196


>SB_27534| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = -3

Query: 364 NSLKKKTSCYFNEKFFKFTTVLTAIHLFLYIHLDVCLAVIKICFRIFVYLTRIR 203
           N ++   +C  ++ F +FT++ T  HL L + +D  LA++    R  + +TR R
Sbjct: 108 NVIRNTPTCIMSDVFLRFTSISTVAHL-LAVTVDRYLAIMH-ALRYHMIVTRRR 159


>SB_47334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 313 FTTVLTAIHL-FLYIHLDVCLAVIKICFRIFVYLTRIR 203
           FTTV+  +   FLY+ +D+C  +  +    F+ L R+R
Sbjct: 49  FTTVIPKMTFYFLYVFIDICFGLSSVVNLTFIALERMR 86


>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 557  IYKYNYKDIVEHRD*NERISCHLEN*GSIT 468
            ++ Y+YKDI EHRD +   + H     +IT
Sbjct: 3891 LFVYSYKDIKEHRDSSGGYTLHFNRTATIT 3920


>SB_2625| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 434

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 343 WFSFLNYLFNLLCASTLVSHVSVKLAPKFPL 435
           W  F+N+LF +LC S  V  +S  LA + P+
Sbjct: 3   WILFVNHLFTILC-SFQVRSISFLLADRSPV 32


>SB_45144| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-38)
          Length = 341

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = -3

Query: 364 NSLKKKTSCYFNEKFFKFTTVLTAIHLFLYIHLDVCLAVIKICFRIFVYLTRIR 203
           N L+  T C   E   +FT++ T +HL L I  D  +A++    R +  +TR R
Sbjct: 88  NILQTLTICIVAENVLRFTSISTVLHL-LAITTDRYMAIMH-SLRYYNIVTRHR 139


>SB_6544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = -3

Query: 364 NSLKKKTSCYFNEKFFKFTTVLTAIHLFLYIHLDVCLAVIKICFRIFVYLTRIR 203
           N L+  T C   E   +FT++ T +HL L I  D  +A++    R +  +TR R
Sbjct: 155 NILQTLTICIVAENVLRFTSISTVLHL-LAITTDRYMAIMH-SLRYYNIVTRHR 206


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,257,638
Number of Sequences: 59808
Number of extensions: 321640
Number of successful extensions: 783
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)