Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0394
         (564 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles ...    24   3.9  
AF513635-1|AAM53607.1|  212|Anopheles gambiae glutathione S-tran...    23   5.2  
AF063021-4|AAC16248.1|   93|Anopheles gambiae unknown protein.         23   6.9  

>M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 574

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 500 KCVRSSHDVRLYLCNCICKSR 562
           K  R    ++L+LC+C+ K R
Sbjct: 476 KSARQLEGLKLFLCDCVSKVR 496


>AF513635-1|AAM53607.1|  212|Anopheles gambiae glutathione
           S-transferase D4 protein.
          Length = 212

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 220 KQIYENIF*SQRGKHPNE 273
           KQIYEN+    R   P+E
Sbjct: 105 KQIYENVHVQMRNSQPSE 122


>AF063021-4|AAC16248.1|   93|Anopheles gambiae unknown protein.
          Length = 93

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 8/32 (25%), Positives = 19/32 (59%)
 Frame = -2

Query: 296 SNTFIFVYSFGCLPRCDQNMFSYICLSHTHSY 201
           S +  FV+   C+P  ++ ++ Y+C S  +++
Sbjct: 58  STSLSFVFLCCCVPSSERLIYYYMCKSTKNTF 89


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 558,380
Number of Sequences: 2352
Number of extensions: 12024
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 52983882
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)