Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0394
         (564 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT024197-1|ABC86259.1|  485|Drosophila melanogaster RE69372p pro...    33   0.35 
AE014297-1535|AAF54826.1|  485|Drosophila melanogaster CG5333-PA...    33   0.35 
AE014297-317|AAN13254.1|   75|Drosophila melanogaster CG31545-PA...    29   4.3  

>BT024197-1|ABC86259.1|  485|Drosophila melanogaster RE69372p
           protein.
          Length = 485

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -2

Query: 323 IFQVYNSFDSNTFI-FVYSFGCL-PRCDQNMFSYICLSHTHSYGKYE 189
           I Q+Y   D + F   +Y FGC+ P C QN  S+ C+   H   +YE
Sbjct: 58  IVQMYAPLDRSQFHRSLYVFGCMNPVCSQNSKSWCCVRTQHLDHQYE 104


>AE014297-1535|AAF54826.1|  485|Drosophila melanogaster CG5333-PA
           protein.
          Length = 485

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -2

Query: 323 IFQVYNSFDSNTFI-FVYSFGCL-PRCDQNMFSYICLSHTHSYGKYE 189
           I Q+Y   D + F   +Y FGC+ P C QN  S+ C+   H   +YE
Sbjct: 58  IVQMYAPLDRSQFHRSLYVFGCMNPVCSQNSKSWCCVRTQHLDHQYE 104


>AE014297-317|AAN13254.1|   75|Drosophila melanogaster CG31545-PA
           protein.
          Length = 75

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 440 LSYKLSFVYM*YFLNFRDDTKCVRSSHDVRLYLC 541
           LS+   F+Y+  +L      KC RS+HDV +Y+C
Sbjct: 19  LSFSSLFIYLPIYLCICIP-KCSRSAHDVCIYVC 51


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,106,502
Number of Sequences: 53049
Number of extensions: 460933
Number of successful extensions: 901
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2193288294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)