Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0394
         (564 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78546-3|CAB01768.2|  361|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U80437-14|ABO52817.1| 1590|Caenorhabditis elegans Histone methyl...    28   5.3  
U80437-13|ABO52816.1| 1604|Caenorhabditis elegans Histone methyl...    28   5.3  
Z32680-1|CAA83599.1| 1223|Caenorhabditis elegans Hypothetical pr...    27   9.3  
U13019-16|AAK84569.1|  311|Caenorhabditis elegans Serpentine rec...    27   9.3  

>Z78546-3|CAB01768.2|  361|Caenorhabditis elegans Hypothetical
           protein T21H8.2 protein.
          Length = 361

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 438 R*VTS*ALYTCNTSLIFEMTRNAFVLVTMFDYIF 539
           R V S   Y    S+IF M  NAF+ +T++ Y+F
Sbjct: 269 RSVLSLTHYKQFASIIFVMPHNAFISMTLYYYLF 302


>U80437-14|ABO52817.1| 1590|Caenorhabditis elegans Histone
            methyltransferase-likeprotein 1, isoform b protein.
          Length = 1590

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 43   EIPGYTRYGCRFVVRGTYRHRHVG*WEFPLKFQQ 144
            ++PGY  YG    V G Y + H G   +P  + Q
Sbjct: 1238 QMPGYESYGVYDPVNGVYMYPHPGAGYYPPAYPQ 1271


>U80437-13|ABO52816.1| 1604|Caenorhabditis elegans Histone
            methyltransferase-likeprotein 1, isoform a protein.
          Length = 1604

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 43   EIPGYTRYGCRFVVRGTYRHRHVG*WEFPLKFQQ 144
            ++PGY  YG    V G Y + H G   +P  + Q
Sbjct: 1252 QMPGYESYGVYDPVNGVYMYPHPGAGYYPPAYPQ 1285


>Z32680-1|CAA83599.1| 1223|Caenorhabditis elegans Hypothetical protein
            C28A5.1 protein.
          Length = 1223

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 193  TSDNFKFSIRAHNKVLTVEISKETPISQHAYAYMCL*QRND 71
            T DN KF  RA N  LT+ ++  T +      Y  L ++ +
Sbjct: 1142 TDDNHKFQFRARNDSLTIGLNYLTDMLTKGKVYKMLYEKQE 1182


>U13019-16|AAK84569.1|  311|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 6 protein.
          Length = 311

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/48 (22%), Positives = 27/48 (56%)
 Frame = -3

Query: 283 FLYIHLDVCLAVIKICFRIFVYLTRIRMANTSDNFKFSIRAHNKVLTV 140
           +L   +D+ L+++ + F IF Y   + +    ++F F +RA+  ++ +
Sbjct: 59  WLLYTMDLALSLLNLFFDIFYYRLTLFVPQICESFSFFLRANPLLIDI 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,317,715
Number of Sequences: 27780
Number of extensions: 253848
Number of successful extensions: 636
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)