Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0394
         (564 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13000.1 68418.m01490 glycosyl transferase family 48 protein ...    27   8.7  
At3g56940.1 68416.m06334 dicarboxylate diiron protein, putative ...    27   8.7  
At2g31960.1 68415.m03905 glycosyl transferase family 48 protein ...    27   8.7  
At1g05570.1 68414.m00575 callose synthase 1 (CALS1) / 1,3-beta-g...    27   8.7  

>At5g13000.1 68418.m01490 glycosyl transferase family 48 protein
            contains Pfam profile: PF02364 1,3-beta-glucan synthase
          Length = 1889

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = -3

Query: 343  SCYFNEKFFKFTTVLTAIHLFLYIH 269
            SCYF    F F+T++T + ++++++
Sbjct: 1559 SCYFTTVGFYFSTLITVLTVYIFLY 1583


>At3g56940.1 68416.m06334 dicarboxylate diiron protein, putative
           (Crd1) similar to leucine-containing zipper protein
           At103 GP:6911864; contains Pfam profile PF05447: Copper
           response defect 1 (CRD1)
          Length = 409

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +1

Query: 16  LSLQIGPLPEIPGYTRYGCRFVVRGTYRHRHVG*WEFPLKFQQLR 150
           L+L +G L +   YT +  +F+   TY    +G W +   ++ L+
Sbjct: 191 LALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLK 235


>At2g31960.1 68415.m03905 glycosyl transferase family 48 protein
            contains Pfam profile: PF02364 1,3-beta-glucan synthase;
            contains non-consensus splice aite AC at exon 33
          Length = 1959

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -3

Query: 343  SCYFNEKFFKFTTVLTAIHLFLYIH 269
            SCYF    F F+T+LT + ++++++
Sbjct: 1518 SCYFTTIGFYFSTMLTVLTVYVFLY 1542


>At1g05570.1 68414.m00575 callose synthase 1 (CALS1) / 1,3-beta-glucan
            synthase 1 nearly identical to callose synthase 1
            catalytic subunit [Arabidopsis thaliana] GI:13649388
          Length = 1922

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -3

Query: 343  SCYFNEKFFKFTTVLTAIHLFLYIH 269
            SCYF    F F+T+LT + ++++++
Sbjct: 1481 SCYFTTIGFYFSTMLTVLTVYVFLY 1505


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,175,359
Number of Sequences: 28952
Number of extensions: 217616
Number of successful extensions: 505
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)