Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0393
         (683 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q44QW9 Cluster: Putative uncharacterized protein precur...    34   3.7  
UniRef50_A2YPA3 Cluster: Putative uncharacterized protein; n=3; ...    33   6.5  
UniRef50_Q05FK9 Cluster: Putative GTPase; n=1; Candidatus Carson...    33   8.6  
UniRef50_A5B6N3 Cluster: Putative uncharacterized protein; n=1; ...    33   8.6  

>UniRef50_Q44QW9 Cluster: Putative uncharacterized protein precursor;
            n=4; Chlorobium/Pelodictyon group|Rep: Putative
            uncharacterized protein precursor - Chlorobium limicola
            DSM 245
          Length = 1521

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 22/72 (30%), Positives = 32/72 (44%)
 Frame = -1

Query: 284  RRDVCLFNFMLNNFERHQVGCDENTSSLDVWMTTTNYTLRKRLYLVRGKQSHVTKGYWKS 105
            +R+   +N  LN F     G    + S    + T++  L  R  + +GKQ  V  G   S
Sbjct: 788  KRNGSSYNISLNRFSAGNGGSRWQSVSTSPVVITSSSALFSRFAIAKGKQQVVLDGELSS 847

Query: 104  SNLGTI*HTVSN 69
            S  GT   T+SN
Sbjct: 848  SKAGTFQCTLSN 859


>UniRef50_A2YPA3 Cluster: Putative uncharacterized protein; n=3;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. indica (Rice)
          Length = 1691

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +3

Query: 507 EVLCACRISNFASILNVA*ETIYLFICLLSSEFFYLFKEELVIMFS 644
           EV  ACR+ NF +   +A +  YL  CL+ + F  L ++ L  + S
Sbjct: 673 EVARACRMGNFIAFFRLARKATYLQACLMHAHFAKLRRQALASLHS 718


>UniRef50_Q05FK9 Cluster: Putative GTPase; n=1; Candidatus
           Carsonella ruddii PV|Rep: Putative GTPase - Carsonella
           ruddii (strain PV)
          Length = 254

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
 Frame = +1

Query: 79  VCYIVPKLLLFQYPFVTCDCFPRTKY----NLFRNV*FVVVIHTSKLDVFSSHPTWWRSK 246
           + +I+ K++ F + F+    F    Y    N+ +N+ F+ + +  KL VF   PT++ SK
Sbjct: 179 IIHILIKIIKFYFYFLYLKNFKNNYYWIILNINKNIFFLKLFNKIKLIVF---PTFFISK 235

Query: 247 LFNIKLKR 270
           +FN  LK+
Sbjct: 236 IFNFGLKK 243


>UniRef50_A5B6N3 Cluster: Putative uncharacterized protein; n=1;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 372

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +2

Query: 77  QYVILS--LNYYFSSIPLSHVTAFRALNIISFVMCNSLLSSTHLSWTYSRHIRPGGVRNY 250
           Q+VI+S  L    + IP  H  + R +N++S V+C S  +S      Y  H +   V+NY
Sbjct: 156 QFVIISGVLMLVLAQIPSFH--SLRHINLVSLVLCLSYSASATAGSIYIGHSKTAPVKNY 213


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 619,273,157
Number of Sequences: 1657284
Number of extensions: 11789447
Number of successful extensions: 25088
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25044
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)