Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0393
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            27   2.5  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   3.3  
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur...    25   7.7  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    25   7.7  

>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 194 WMTTTNYTLRKRLYLVRGKQSHVTKGYWKSSNL 96
           W TT+  T  K+  +V GKQ  V     K S L
Sbjct: 136 WFTTSEVTEEKKSNVVEGKQEPVNNDTLKDSKL 168


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 193 HTSKLDVFSSHPTWWR 240
           H   ++ F +HP WWR
Sbjct: 266 HYGDVEAFGNHPPWWR 281


>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
           deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 398

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +2

Query: 317 TEYECQTQHNIRLFVSHKYLRNIISRKMIYLKPRHNLISC 436
           T  +  T   +RL ++H  + +II R  + +K   +  SC
Sbjct: 171 TPSDANTPRKLRLLIAHSLMGSIIGRNGLRIKLIQDKCSC 210


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
 Frame = -1

Query: 326 HILFNNVGRDVKTKRRDVCLFNFMLNNFER--HQVGCDENTSSLDVWMTTTNYTLRKRLY 153
           ++ ++N          DV L  + + N +   ++V    +T++L    T T+ TL K   
Sbjct: 246 NVRYSNSKPSTPLSPEDVDLGTYTVKNRDSWSNEVNLSASTNNLS---TNTSGTL-KPYS 301

Query: 152 LVRGKQSHVTKGYWKSSNLGTI*HTVSNANSS 57
           L   + S  +KG   +++L +I  T++N+N S
Sbjct: 302 LSSSRSSSYSKGVNSAASLQSIWETMNNSNPS 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,714,442
Number of Sequences: 5004
Number of extensions: 55345
Number of successful extensions: 125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)