Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0393
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1486 + 26899479-26899549,26899861-26899989,26900649-269008...    33   0.21 
08_02_1137 + 24623967-24623991,24625815-24625831,24626100-246262...    31   0.64 
09_04_0541 + 18437075-18440062                                         31   0.85 
09_02_0318 - 7191763-7191879,7192375-7192494,7192568-7192666,719...    28   7.9  

>07_03_1486 +
           26899479-26899549,26899861-26899989,26900649-26900834,
           26901025-26901247,26901662-26901666,26901796-26901924,
           26902697-26902894,26903138-26903356,26903461-26903699,
           26903797-26903888,26904009-26904224,26904327-26904554,
           26904631-26904722,26904806-26904899,26905475-26905567,
           26905667-26906640,26906727-26906841,26907135-26908895
          Length = 1687

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +3

Query: 507 EVLCACRISNFASILNVA*ETIYLFICLLSSEFFYLFKEELVIMFS 644
           EV  ACR+ NF +   +A +  YL  CL+ + F  L ++ L  + S
Sbjct: 673 EVARACRMGNFIAFFRLARKATYLQACLMHAHFAKLRRQALASLHS 718


>08_02_1137 +
           24623967-24623991,24625815-24625831,24626100-24626216,
           24626399-24626440,24627246-24629705
          Length = 886

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +1

Query: 133 DCFPRTKYNLFRNV*FVVVIHTSKLDVFSSHPTWWRSKLFNIKLKRHTSRRFVF--TSRP 306
           D F R K  LFR+V +++VI     D   S   WW  K  +  + R+T    V   T  P
Sbjct: 428 DAFQRVKRELFRDVPYLLVI-----DNLESERDWWEGKDLHDFIPRNTGATHVIVTTRLP 482

Query: 307 TLLN 318
            ++N
Sbjct: 483 RVIN 486


>09_04_0541 + 18437075-18440062
          Length = 995

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +1

Query: 133 DCFPRTKYNLFRNV*FVVVIHTSKLDVFSSHPTWWRSKLFNIKLKRHT--SRRFVFTSRP 306
           D F R K  LFR+V ++++I     D   +   WW  K  +  + R+T  S   V T  P
Sbjct: 536 DAFQRVKRELFRDVPYLLII-----DNIDNERDWWEGKDLHDFIPRNTGASHVIVTTRLP 590

Query: 307 TLLN 318
            ++N
Sbjct: 591 VVMN 594


>09_02_0318 -
           7191763-7191879,7192375-7192494,7192568-7192666,
           7192846-7192957,7193058-7193161,7193341-7193520,
           7193611-7193880,7194364-7194660,7195283-7195477
          Length = 497

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/58 (32%), Positives = 24/58 (41%)
 Frame = +2

Query: 74  KQYVILSLNYYFSSIPLSHVTAFRALNIISFVMCNSLLSSTHLSWTYSRHIRPGGVRN 247
           K  V L  NY    IP+S+        I      NS   + HLS  Y  +I  GG +N
Sbjct: 89  KPAVPLGANYRLIDIPVSNCLNSNVSKIYVLTQFNSASLNRHLSRAYGNNI--GGYKN 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,869,012
Number of Sequences: 37544
Number of extensions: 297105
Number of successful extensions: 555
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)