Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0393
         (683 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    25   2.2  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    25   2.9  
AY341217-1|AAR13781.1|  200|Anopheles gambiae SRPN10 protein.          23   6.8  
AY341216-1|AAR13780.1|  200|Anopheles gambiae SRPN10 protein.          23   6.8  

>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
           channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 478 NHLTILKHLSSLKITTNEVVTRFEVYHFSA 389
           N LT+L HL S+K     V  RF+ Y + A
Sbjct: 616 NELTVLTHLDSMK----RVSLRFQKYFYGA 641


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +1

Query: 112  QYPFVTCDCFPRTKYNLFRNV*FVVVIHTSK 204
            QY FVT    PR K N   N   V+V+H  K
Sbjct: 995  QYFFVTPKLLPRLKCNAKMN---VIVVHNGK 1022


>AY341217-1|AAR13781.1|  200|Anopheles gambiae SRPN10 protein.
          Length = 200

 Score = 23.4 bits (48), Expect = 6.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -1

Query: 251 NNFERHQVGCDENTSSLDVWMTTTNYTLRKRLY 153
           N+ +R +V   +N+SSLD    + + +   +LY
Sbjct: 37  NHLDRPKVTMADNSSSLDAQFVSQSNSFATKLY 69


>AY341216-1|AAR13780.1|  200|Anopheles gambiae SRPN10 protein.
          Length = 200

 Score = 23.4 bits (48), Expect = 6.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -1

Query: 251 NNFERHQVGCDENTSSLDVWMTTTNYTLRKRLY 153
           N+ +R +V   +N+SSLD    + + +   +LY
Sbjct: 37  NHLDRPKVTMADNSSSLDAQFVSQSNSFATKLY 69


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 669,761
Number of Sequences: 2352
Number of extensions: 12781
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68995575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)