Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0393
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125954-4|AAD14710.1|  337|Caenorhabditis elegans Seven tm rece...    29   2.3  
AC006769-5|AAF60577.2|  339|Caenorhabditis elegans Hypothetical ...    29   2.3  
AC006634-1|AAF39796.1|  231|Caenorhabditis elegans Hypothetical ...    29   4.1  
Z81102-2|CAB03203.1|  313|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U39667-6|AAC69011.2|  640|Caenorhabditis elegans Disorganized mu...    28   5.4  
AY095447-1|AAM23316.1|  640|Caenorhabditis elegans DIM-1(L) prot...    28   5.4  
Z81122-13|CAB03356.3|  368|Caenorhabditis elegans Hypothetical p...    27   9.4  

>AF125954-4|AAD14710.1|  337|Caenorhabditis elegans Seven tm
           receptor protein 119 protein.
          Length = 337

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/41 (46%), Positives = 22/41 (53%)
 Frame = +2

Query: 128 HVTAFRALNIISFVMCNSLLSSTHLSWTYSRHIRPGGVRNY 250
           H+TAF      SF +C  LL STH  + Y    RP  VRNY
Sbjct: 87  HITAFYCS---SFGVC-VLLLSTHFCYRYMAVCRPHIVRNY 123


>AC006769-5|AAF60577.2|  339|Caenorhabditis elegans Hypothetical
           protein Y45G12C.10 protein.
          Length = 339

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/41 (46%), Positives = 22/41 (53%)
 Frame = +2

Query: 128 HVTAFRALNIISFVMCNSLLSSTHLSWTYSRHIRPGGVRNY 250
           H+TAF      SF +C  LL STH  + Y    RP  VRNY
Sbjct: 89  HITAFYCS---SFGVC-VLLLSTHFCYRYMAVCRPHIVRNY 125


>AC006634-1|AAF39796.1|  231|Caenorhabditis elegans Hypothetical
           protein F35F11.3 protein.
          Length = 231

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 251 NNFERHQVGCDENTSSLDVWMTTTNYTLR 165
           +NFE     CDE  +++D W+  T  +LR
Sbjct: 122 DNFEDECTRCDEFPNNIDFWINDTTISLR 150


>Z81102-2|CAB03203.1|  313|Caenorhabditis elegans Hypothetical
           protein M02B1.4 protein.
          Length = 313

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +3

Query: 573 YLFICLLSSEFFYLFKEELVIMFSYYI*MV 662
           Y+F+ LL +   YLFK++ + ++ Y + M+
Sbjct: 128 YVFLPLLGANIAYLFKKDKLTLYEYRVSMI 157


>Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical protein
            C14C10.5 protein.
          Length = 1908

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 220  SHPTWWRSKLFNIKLKRHT--SRRFVF 294
            S P WW+SK+  +K+ R    S RFVF
Sbjct: 1736 SSPCWWKSKVAALKMLRMLVFSNRFVF 1762


>U39667-6|AAC69011.2|  640|Caenorhabditis elegans Disorganized
           muscle protein 1,isoform a protein.
          Length = 640

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
 Frame = -1

Query: 293 KTKRRDVCLFNFMLNNFERHQ---VGCDENTSSLDVWMTTTNYTLRKRLYLVR--GKQSH 129
           K   ++V  F    ++ ERH+   +  D N  +      T+N+  RKR+++ R   KQ H
Sbjct: 162 KVSTKEVEKFGEQSDDEERHERSHIASDFNQKTPQSTHATSNH--RKRIFIGRTGAKQQH 219

Query: 128 VTKGYWKSSNLGTI*HTVSNANSSNPT 48
           V+K   +S     I   VS +N++N T
Sbjct: 220 VSKKATESELPYNI--DVSTSNTTNAT 244


>AY095447-1|AAM23316.1|  640|Caenorhabditis elegans DIM-1(L)
           protein.
          Length = 640

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
 Frame = -1

Query: 293 KTKRRDVCLFNFMLNNFERHQ---VGCDENTSSLDVWMTTTNYTLRKRLYLVR--GKQSH 129
           K   ++V  F    ++ ERH+   +  D N  +      T+N+  RKR+++ R   KQ H
Sbjct: 162 KVSTKEVEKFGEQSDDEERHERSHIASDFNQKTPQSTHATSNH--RKRIFIGRTGAKQQH 219

Query: 128 VTKGYWKSSNLGTI*HTVSNANSSNPT 48
           V+K   +S     I   VS +N++N T
Sbjct: 220 VSKKATESELPYNI--DVSTSNTTNAT 244


>Z81122-13|CAB03356.3|  368|Caenorhabditis elegans Hypothetical
           protein T13F2.5 protein.
          Length = 368

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 83  VILSLNYYFSSIPLS-HVTAFRALNIISFVMC 175
           +++ L Y F  IP   HV+   ++N+++FV+C
Sbjct: 169 LMIGLTYAFEIIPTYIHVSCLVSINLLAFVIC 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,742,687
Number of Sequences: 27780
Number of extensions: 300400
Number of successful extensions: 642
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)