Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0393
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     25   0.89 
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               23   3.6  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   4.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   6.3  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   8.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   8.3  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 73  ETVCYIVPKLLLFQYPFVT 129
           +TVC+++P +LLF   FV+
Sbjct: 225 KTVCFVIPIMLLFLAFFVS 243


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 201 RCVDDNNELHITKEIIFSARKAVTCDK 121
           RCV D  + HIT+ +I +A    T ++
Sbjct: 119 RCVIDYVKFHITQYMISNANSNTTSEE 145


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 520 HAGYLILHQSSMWPEKLFIYLFVY 591
           H GYLI   +  +   LF+ +F Y
Sbjct: 203 HLGYLIFSSTISFYLPLFVMVFTY 226


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 224 IRPGGVRNYLT 256
           I P G+RNYLT
Sbjct: 331 ILPDGIRNYLT 341


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 95  LNYYFSSIPLSHVTAFRALNIISFVMCNSL 184
           LNY+   + L+H       N   F++ NSL
Sbjct: 219 LNYFTEDVGLNHFYFMLNHNYPPFMLSNSL 248


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 95  LNYYFSSIPLSHVTAFRALNIISFVMCNSL 184
           LNY+   + L+H       N   F++ NSL
Sbjct: 219 LNYFTEDVGLNHFYFMLNHNYPPFMLSNSL 248


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,706
Number of Sequences: 438
Number of extensions: 3998
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)