Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0393
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49160.1 68416.m05373 pyruvate kinase family protein similar ...    30   1.2  
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    27   8.8  

>At3g49160.1 68416.m05373 pyruvate kinase family protein similar to
           SP|Q92122 Pyruvate kinase, muscle isozyme (EC 2.7.1.40)
           (Cytosolic thyroid hormone binding protein) (CTHBP)
           {Xenopus laevis}; contains Pfam profile PF00224:
           Pyruvate kinase, barrel domain
          Length = 710

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = +2

Query: 17  RDTILPCFYSKSDLKNLH*KQYVILSLNYYFSSIPLSHVTAF 142
           RD IL CF S+S + N H K    LSLN+    +P+    AF
Sbjct: 11  RDKIL-CFSSRSHINNQHKKTSYALSLNH--MKLPIQRTLAF 49


>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
            identical to auxin transport protein; BIG [Arabidopsis
            thaliana] GI:21779966; contains Pfam profiles PF02207:
            Putative zinc finger in N-recognin, PF00569: Zinc finger
            ZZ type
          Length = 5098

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 119  PLSHVTAFRALNIISFVMCNSLLSSTHLSWTYSRHI 226
            P S +++      + F+M NSLLS ++ SW   R +
Sbjct: 4908 PGSQLSSTGTEETVQFMMVNSLLSESYESWLQHRRV 4943


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,469,666
Number of Sequences: 28952
Number of extensions: 263195
Number of successful extensions: 543
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)