Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0392
         (850 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    25   0.57 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.3  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       23   3.1  

>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 82  RGVCCLILRLYPNIVLNLLKL 144
           R VC  ++++YP +V+N + L
Sbjct: 167 REVCTFVVQVYPRLVVNTINL 187


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
 Frame = +2

Query: 515 LTASSRNLTSYVQQVSNKSNSNESTMLVATA----TKSLSAGDVW 637
           +T+ S   TS     SNK NS++  ML+        K +   DVW
Sbjct: 423 ITSPSNTNTSTSSTNSNKPNSSDLNMLIKETMPLPRKLVRGQDVW 467


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 580 RINNACRDSNKKFICGRRLGVRTATCSL 663
           R N +C D    F C  + G +  TCSL
Sbjct: 116 RNNGSCVDRIADFECNCKNGWKGKTCSL 143


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,728
Number of Sequences: 336
Number of extensions: 4231
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23451794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)