Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0392
(850 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0388 + 17076157-17076254,17076762-17076813,17077672-170778... 102 4e-22
03_02_0665 - 10268959-10269148,10269344-10269936,10270572-102710... 89 4e-18
12_01_0038 - 312152-312748,312930-313362,313572-314440,314535-31... 83 2e-16
11_01_0039 - 290960-291086,291615-291714,291809-292013,292466-29... 83 4e-16
03_06_0476 + 34199577-34199638,34200267-34200397,34200535-342006... 61 1e-09
07_03_1076 + 23779941-23779988,23780102-23780191,23781580-237816... 59 5e-09
07_03_1774 + 29425486-29425831,29426018-29426235,29426337-294271... 55 8e-08
01_01_1178 + 9385261-9385374,9385457-9385620,9386251-9386453,938... 53 3e-07
06_01_1006 + 7836366-7836460,7836568-7836626,7836877-7836961,783... 52 4e-07
02_05_1131 - 34328168-34328557,34328838-34328957,34329067-343291... 47 2e-05
02_05_0851 + 32215521-32215803,32216371-32217746,32217873-32217938 30 2.0
03_06_0246 + 32622793-32622804,32622883-32623057,32623395-326236... 29 3.5
02_02_0009 + 6068260-6068591,6068797-6068917,6069034-6069122,606... 29 4.7
03_04_0017 - 16468486-16468505,16468597-16468807,16469522-164702... 28 8.2
01_05_0658 - 24043655-24043945,24044003-24044257,24044359-240445... 28 8.2
01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,260... 28 8.2
>11_04_0388 +
17076157-17076254,17076762-17076813,17077672-17077867,
17078242-17078321,17078465-17078581,17078895-17078950,
17079238-17079268,17079292-17079342,17080411-17080477,
17080621-17080724,17080802-17080909,17081874-17081987
Length = 357
Score = 102 bits (244), Expect = 4e-22
Identities = 60/151 (39%), Positives = 85/151 (56%), Gaps = 4/151 (2%)
Frame = +1
Query: 172 GNNEVELSEAEAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVKSVC 351
G E EL+ E YDRQIR+WG+D+QKRL A VL+ G++G E KN++L GV S+
Sbjct: 5 GGAEEELTAQETALYDRQIRVWGVDAQKRLSKAHVLVCGMNGTTTEFCKNIVLAGVGSLS 64
Query: 352 LLDNEKLKQIDLYSQFLCPPDKI---GVNRAEGSLERARGLNPMVDVTSHTKGVDELPD- 519
L+D+ + + DL + FL P D+ G +RAE E + NPMV V KG L D
Sbjct: 65 LMDDHLVTEDDLNANFLIPHDESIYGGRSRAEVCCESLKDFNPMVRVAVE-KGDPSLIDG 123
Query: 520 SFFTEFDVVCATGLKQEQFERINNACRDSNK 612
F +FD++ + + IN+ CR +K
Sbjct: 124 EFLDKFDIIVVSCAPIKTKLLINDNCRKRSK 154
>03_02_0665 -
10268959-10269148,10269344-10269936,10270572-10271004,
10271172-10272040,10272121-10272915,10273612-10273829,
10274931-10275230,10276834-10277161
Length = 1241
Score = 89.0 bits (211), Expect = 4e-18
Identities = 49/145 (33%), Positives = 83/145 (57%)
Frame = +1
Query: 169 VGNNEVELSEAEAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVKSV 348
V N E++E + + + RQ+ ++G ++ +RL A+ VL+ GL+GLGAEIAKN+ L GVKS+
Sbjct: 162 VSGNGSEVAEIDEDLHSRQLAVYGRETMRRLFASNVLVSGLNGLGAEIAKNLALAGVKSI 221
Query: 349 CLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERARGLNPMVDVTSHTKGVDELPDSFF 528
L D ++ DL F D IG NRA + + LN V +++ T ++L +
Sbjct: 222 TLHDMGNVEMWDLSGNFFLSEDDIGKNRAVACTAKLQELNNAVLISTLT---EDLTNEHL 278
Query: 529 TEFDVVCATGLKQEQFERINNACRD 603
++F V T + ++ ++ CR+
Sbjct: 279 SKFQAVVFTDISLDKAFEFDDYCRN 303
Score = 48.8 bits (111), Expect = 5e-06
Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Frame = +1
Query: 211 QYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVK-----SVCLLDNEKLK 375
+YD QI ++G QK++R A V ++G LG E KN+ L GV + + D++ ++
Sbjct: 573 RYDAQISVFGSKLQKKMRDANVFVVGSGALGCEFLKNLALMGVSCGLKGKLTITDDDIIE 632
Query: 376 QIDLYSQFLCPPDKIGVNRAEGSLERARGLNPMVDVTS 489
+ +L QFL IG ++ + A +N + + +
Sbjct: 633 KSNLSRQFLFRDWNIGQAKSTVAAAAASAINSSLHINA 670
>12_01_0038 -
312152-312748,312930-313362,313572-314440,314535-314584,
314589-315192,315674-315718,316100-316317,317020-317332,
318681-318716
Length = 1054
Score = 83.4 bits (197), Expect = 2e-16
Identities = 41/100 (41%), Positives = 67/100 (67%)
Frame = +1
Query: 196 EAEAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEKLK 375
E + + + RQ+ ++G ++ KRL A+ VL+ GL+GLGAEIAKN++L GVKSV L D++ ++
Sbjct: 78 EIDEDLHSRQLAVYGRETMKRLFASNVLVSGLNGLGAEIAKNLVLAGVKSVTLHDDDNVE 137
Query: 376 QIDLYSQFLCPPDKIGVNRAEGSLERARGLNPMVDVTSHT 495
DL S F +G NRA+ +++ + LN V +++ T
Sbjct: 138 LWDLSSNFFLTEKDVGQNRAQTCVQKLQELNNAVIISTIT 177
Score = 53.2 bits (122), Expect = 3e-07
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Frame = +1
Query: 202 EAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVK-----SVCLLDNE 366
E +YD QI ++G + QK+L AK+ ++G LG E KN+ L G+ + + D++
Sbjct: 445 ENTRYDAQISVFGSNLQKKLEQAKIFMVGSGALGCEFLKNLALMGISCNQNGKLTVTDDD 504
Query: 367 KLKQIDLYSQFLCPPDKIGVNRAEGSLERARGLNPMVDV 483
+++ +L QFL IG ++ + A +NP + V
Sbjct: 505 VIEKSNLSRQFLFRDWNIGQPKSTVAATAAMAINPKLHV 543
>11_01_0039 -
290960-291086,291615-291714,291809-292013,292466-292513,
295071-295646,295828-296260,296470-297338,297433-298227,
298709-298753,299135-299352,300055-300364,302715-302984
Length = 1331
Score = 82.6 bits (195), Expect = 4e-16
Identities = 41/100 (41%), Positives = 67/100 (67%)
Frame = +1
Query: 196 EAEAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEKLK 375
E + + + RQ+ ++G ++ KRL A+ VL+ GL+GLGAEIAKN++L GVKSV L D++ ++
Sbjct: 155 EIDEDLHSRQLAVYGRETMKRLFASNVLVSGLNGLGAEIAKNLVLAGVKSVNLHDDDNVE 214
Query: 376 QIDLYSQFLCPPDKIGVNRAEGSLERARGLNPMVDVTSHT 495
DL S F +G NRA+ +++ + LN V +++ T
Sbjct: 215 LWDLSSNFFLTEKDVGQNRAQTCVQKLQELNNAVIISTIT 254
Score = 53.2 bits (122), Expect = 3e-07
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Frame = +1
Query: 202 EAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVK-----SVCLLDNE 366
E +YD QI ++G + QK+L AK+ ++G LG E KN+ L G+ + + D++
Sbjct: 569 ENTRYDAQISVFGSNLQKKLEQAKIFMVGSGALGCEFLKNLALMGISCNQNGKLIVTDDD 628
Query: 367 KLKQIDLYSQFLCPPDKIGVNRAEGSLERARGLNPMVDV 483
+++ +L QFL IG ++ + A +NP + V
Sbjct: 629 VIEKSNLSRQFLFRDWNIGQPKSTVAATAAMAINPKLHV 667
>03_06_0476 +
34199577-34199638,34200267-34200397,34200535-34200698,
34201007-34201117,34201308-34201387,34201489-34201639,
34201736-34201829,34202421-34202509,34203672-34203745,
34203859-34204021,34204445-34204530,34205011-34205094,
34205186-34205366,34205837-34205887
Length = 506
Score = 60.9 bits (141), Expect = 1e-09
Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 3/147 (2%)
Frame = +1
Query: 211 QYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEKLKQIDLY 390
+YDRQ+R+WG Q L A + ++ G E KN++L GV SV ++D +D
Sbjct: 15 KYDRQLRIWGDQGQAALEKASICLLTCGPTGTEAMKNLVLGGVGSVTVVD------VDA- 67
Query: 391 SQFLCPPDKIGVNRAEGSLERARGLNPMVD---VTSHTKGVDELPDSFFTEFDVVCATGL 561
+ +G +RA+ + LN V+ V + + SFF++F VV AT L
Sbjct: 68 -------ECLGQSRAKSVCSFLQELNDAVNAKFVEESPLALIDTNPSFFSQFTVVIATQL 120
Query: 562 KQEQFERINNACRDSNKKFICGRRLGV 642
+ ++++ CR +N + R G+
Sbjct: 121 PERSLLKLDDICRKANIVLVAARSYGL 147
>07_03_1076 +
23779941-23779988,23780102-23780191,23781580-23781663,
23781792-23782010,23782873-23782974,23783809-23784207,
23784332-23784561,23784749-23784842,23784931-23785113,
23785254-23785351,23785831-23786143
Length = 619
Score = 58.8 bits (136), Expect = 5e-09
Identities = 33/119 (27%), Positives = 65/119 (54%), Gaps = 3/119 (2%)
Frame = +1
Query: 250 QKRLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEKLKQIDLYSQFLCPPDKIGVN 429
++ ++AAKVL++G G+G E+ K + L+G + + ++D + ++ +L QFL +G +
Sbjct: 12 EEAVKAAKVLMVGAGGIGCELLKTLALSGFRDIHIIDLDTIEVSNLNRQFLFRQSHVGQS 71
Query: 430 RAEGSLERARGLNPMVDVTSHTKGVDELPDS--FFTEFDVVCATGLKQEQFER-INNAC 597
+A + + P +++TS+ V + + FF +F+VV GL R +N C
Sbjct: 72 KAHVARDAVLKFRPNINITSYHANVKDAQFNVEFFKQFNVV-LNGLDNLDARRHVNRLC 129
>07_03_1774 +
29425486-29425831,29426018-29426235,29426337-29427131,
29427206-29428074,29428317-29428749,29429263-29429859
Length = 1085
Score = 54.8 bits (126), Expect = 8e-08
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 27/167 (16%)
Frame = +1
Query: 178 NEVELSEAEAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGA----------------- 306
N V + E + + + RQ+ ++G ++ +RL A+ VL+ GL+GLGA
Sbjct: 44 NGVVVPEIDEDLHSRQLAVYGRETMRRLFASHVLVSGLNGLGAEIGSSFYPLTLFVLCFF 103
Query: 307 --EIA--------KNVILTGVKSVCLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERA 456
+IA KN+ L GVKSV L D + ++ DL + F + IG NRA + +
Sbjct: 104 LFQIAFNCLLITTKNLALAGVKSVTLHDVKNVEMWDLSANFFLSENDIGKNRAAACVSKL 163
Query: 457 RGLNPMVDVTSHTKGVDELPDSFFTEFDVVCATGLKQEQFERINNAC 597
+ LN V V++ T +EL ++F V T + ++ ++ C
Sbjct: 164 QELNNAVLVSALT---EELTTDHLSKFQAVVFTDIGLDKAYEFDDYC 207
Score = 46.0 bits (104), Expect = 4e-05
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 10/122 (8%)
Frame = +1
Query: 211 QYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVK-----SVCLLDNEKLK 375
+YD QI ++G QK+L A ++G LG E KN+ L GV + + D++ ++
Sbjct: 479 RYDAQISVFGSKLQKKLEEANTFVVGSGALGCEFLKNLALMGVSCSPKGKLTITDDDVIE 538
Query: 376 QIDLYSQFLCPPDKIGVNRAEGSLERARGLNP--MVDVTSHTKGVDE---LPDSFFTEFD 540
+ +L QFL I ++ + A +NP +D + D D+F+ D
Sbjct: 539 KSNLSRQFLFRDWNIRQAKSTVAAAAASAINPNLCIDALQNRACPDTENVFHDTFWEGLD 598
Query: 541 VV 546
VV
Sbjct: 599 VV 600
>01_01_1178 +
9385261-9385374,9385457-9385620,9386251-9386453,
9387130-9387362,9387584-9387640,9388120-9388241,
9388366-9388425,9388426-9388543,9389005-9389286
Length = 450
Score = 53.2 bits (122), Expect = 3e-07
Identities = 24/92 (26%), Positives = 53/92 (57%)
Frame = +1
Query: 271 KVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLE 450
+VL++G GLG E+ K++ L+G K++ ++D + + +L QFL +G ++AE + +
Sbjct: 48 EVLVVGAGGLGCELLKDLALSGFKNIHVIDMDTIDVSNLNRQFLFRVQDVGKSKAEVAAK 107
Query: 451 RARGLNPMVDVTSHTKGVDELPDSFFTEFDVV 546
R V++ H +++ F+++F ++
Sbjct: 108 RVMERVSGVNIVPHFCRIEDKEIEFYSQFSII 139
>06_01_1006 +
7836366-7836460,7836568-7836626,7836877-7836961,
7837349-7837496,7837774-7837986,7838403-7838537,
7838659-7838790,7838884-7839099,7839212-7839336,
7839787-7839844,7839977-7840087
Length = 458
Score = 52.4 bits (120), Expect = 4e-07
Identities = 25/91 (27%), Positives = 53/91 (58%)
Frame = +1
Query: 163 KMVGNNEVELSEAEAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVK 342
++V +++ E +EQ R I+ +G++SQK++ + V++IGL G+G+ A ++ +GV
Sbjct: 61 RVVATSDLLDDEVVSEQLTRNIQFFGMESQKKVTGSFVVVIGLGGVGSHAASMLLRSGVG 120
Query: 343 SVCLLDNEKLKQIDLYSQFLCPPDKIGVNRA 435
+ L+D +++ L + D +G +A
Sbjct: 121 RLLLVDFDQVSLSSLNRHAVATRDDVGTPKA 151
>02_05_1131 -
34328168-34328557,34328838-34328957,34329067-34329185,
34329659-34329767,34329847-34329885,34341125-34341203,
34341483-34341547,34341850-34341905,34342141-34342233,
34342312-34342579
Length = 445
Score = 46.8 bits (106), Expect = 2e-05
Identities = 23/96 (23%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Frame = +1
Query: 211 QYDRQIRL--WGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEKLKQID 384
+Y R + L +GL+ Q++L + +L++G GLG+ +A + GV + ++D ++++ +
Sbjct: 76 RYRRHLLLPQFGLEGQRKLSQSSILVVGAGGLGSPVAMYLAACGVGCLGIVDGDRVELDN 135
Query: 385 LYSQFLCPPDKIGVNRAEGSLERARGLNPMVDVTSH 492
L+ Q + +G + + + R + +VD T++
Sbjct: 136 LHRQIIHIEAYVGQPKVKSTAASCRAYDIVVDATNN 171
>02_05_0851 + 32215521-32215803,32216371-32217746,32217873-32217938
Length = 574
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 585 QQCLSRQQQKVYLRATSGGTYGYMFSDLVDHEYSEGDC 698
Q CLSR Q +Y +A+S Y+ L +HE + C
Sbjct: 122 QSCLSRYQSVLYRKASSHFPSAYLLERLREHEALQKKC 159
>03_06_0246 +
32622793-32622804,32622883-32623057,32623395-32623659,
32624594-32624693,32625076-32625125,32625239-32625293,
32625742-32625774
Length = 229
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 440 PSARFTPILSGGHRNWEYRSIC 375
P +F I +GGH WE+RSIC
Sbjct: 182 PKPKF--IFNGGHELWEWRSIC 201
>02_02_0009 + 6068260-6068591,6068797-6068917,6069034-6069122,
6069207-6069291,6069421-6069580,6069667-6069743,
6069848-6069898,6069979-6070069,6070167-6070468,
6070549-6070830,6070911-6071388,6071457-6071560,
6071647-6071809,6071895-6072017,6072099-6072217,
6072304-6072636,6072713-6073003,6073088-6073171,
6073260-6073393,6073478-6073705,6073795-6073966,
6074062-6074316,6074408-6074668
Length = 1444
Score = 29.1 bits (62), Expect = 4.7
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 790 IYSSTFYCYRNCFHGHFFLHHRARVWW 710
I S+ FYC N F G R +WW
Sbjct: 1338 IVSTAFYCIWNIFAGFLIPRPRIPIWW 1364
>03_04_0017 -
16468486-16468505,16468597-16468807,16469522-16470214,
16470338-16470398,16470624-16470706
Length = 355
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +3
Query: 186 RTF*GRSRTVRPTNPPVGLRLAEETTCSQSINHRLVRTRR*NC 314
RT G+ RP+N P E + +HRL R RR C
Sbjct: 282 RTVLGKKIAARPSNSPASRTYFLEGNNAHGDDHRLCRRRRPRC 324
>01_05_0658 -
24043655-24043945,24044003-24044257,24044359-24044530,
24044617-24044844,24045688-24045821,24045908-24045991,
24046202-24046492,24046571-24046903,24047002-24047246,
24047476-24047742,24048305-24048465,24048556-24048872,
24048966-24049247,24049325-24049626,24049699-24049789,
24049881-24049934,24050028-24050104,24050192-24050367,
24051331-24051540,24051626-24052029
Length = 1457
Score = 28.3 bits (60), Expect = 8.2
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +1
Query: 133 LLKL*ITALQKMVGNNEVELSEAEAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEI 312
L L +T L K G ++ +SE E ++ I LD + + I+G +G G+EI
Sbjct: 771 LFTLALTYL-KPDGKSQPSISEEELKEKQANINGNVLDVDTMASSNNLAIVGSTGTGSEI 829
Query: 313 AKN 321
A N
Sbjct: 830 ADN 832
>01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,
2602637-2602810,2603032-2603098,2603735-2603757,
2603899-2604001,2604087-2604848,2605098-2605292,
2605496-2606115,2606429-2606480,2606558-2607197,
2608366-2608574,2608660-2609189,2609500-2609566,
2609651-2609728,2610415-2610483,2610569-2610643
Length = 2021
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 529 TEFDVVCATGLKQEQFERINNACRDSNKK 615
+E DV C+TG+ E+ + + CRDS+ K
Sbjct: 1204 SEPDVSCSTGVVSEESLPVCSLCRDSDSK 1232
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,439,508
Number of Sequences: 37544
Number of extensions: 479694
Number of successful extensions: 1281
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1278
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -