Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0392
         (850 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57150| Best HMM Match : ThiF (HMM E-Value=2.8e-35)                  91   1e-18
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)              79   6e-15
SB_28306| Best HMM Match : No HMM Matches (HMM E-Value=.)              72   5e-13
SB_4956| Best HMM Match : ThiF (HMM E-Value=0)                         60   2e-09
SB_22173| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   2e-09
SB_2839| Best HMM Match : No HMM Matches (HMM E-Value=.)               53   3e-07
SB_22835| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     30   2.1  
SB_46888| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_17747| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25)               28   8.3  
SB_12793| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_9975| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-38)                  28   8.3  
SB_6115| Best HMM Match : efhand (HMM E-Value=0.22)                    28   8.3  
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.3  
SB_3552| Best HMM Match : PH (HMM E-Value=0.15)                        28   8.3  

>SB_57150| Best HMM Match : ThiF (HMM E-Value=2.8e-35)
          Length = 1026

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 57/161 (35%), Positives = 83/161 (51%)
 Frame = +1

Query: 160 QKMVGNNEVELSEAEAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGV 339
           Q +    + E  + +   Y RQ+ + G ++ K++  + VLI GL GLG EIAKNV+L GV
Sbjct: 42  QSVRDEGQAEKMDIDEGLYSRQLYVLGHEAMKKMAVSNVLISGLRGLGVEIAKNVVLGGV 101

Query: 340 KSVCLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERARGLNPMVDVTSHTKGVDELPD 519
           KSV L D   ++  DL SQF      +G NRAE S  R   LN  V ++ +T+   +L +
Sbjct: 102 KSVTLHDTGAVELSDLTSQFFLNKKDVGKNRAEVSHPRIAELNTYVSMSVNTQ---KLTE 158

Query: 520 SFFTEFDVVCATGLKQEQFERINNACRDSNKKFICGRRLGV 642
            F  +F VV  T    E+   I++ C     K I     G+
Sbjct: 159 EFINKFQVVVLTESSLEEQLWISDFCHSKGIKLIISDTKGL 199



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
 Frame = +1

Query: 211 QYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVKS-----VCLLDNEKLK 375
           +YD QI ++G + QK+L   K  ++G   +G E  KN  + G+ S     +   D + ++
Sbjct: 324 RYDGQIAVFGSEFQKKLGQQKYFVVGAGAIGCEHLKNFAMMGLGSGEGGHIYTTDMDTIE 383

Query: 376 QIDLYSQFLCPP 411
           + +L  QFL  P
Sbjct: 384 KSNLNRQFLFRP 395


>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2174

 Score = 78.6 bits (185), Expect = 6e-15
 Identities = 38/96 (39%), Positives = 52/96 (54%)
 Frame = +1

Query: 352 LLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERARGLNPMVDVTSHTKGVDELPDSFFT 531
           +LDN  + + D  SQFL P + +G NRAE SL R + LNPMV V++    +    D+F  
Sbjct: 1   MLDNNPVTERDFVSQFLAPREALGKNRAEASLARTQALNPMVAVSADKNNITAKADTFLD 60

Query: 532 EFDVVCATGLKQEQFERINNACRDSNKKFICGRRLG 639
           +FDVV ATG   +    ++  CR  N KF      G
Sbjct: 61  DFDVVVATGCSSDILANLDERCRAKNIKFFASDVFG 96


>SB_28306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 72.1 bits (169), Expect = 5e-13
 Identities = 43/113 (38%), Positives = 60/113 (53%), Gaps = 2/113 (1%)
 Frame = +1

Query: 178 NEVELSEAEAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLL 357
           N+VE+ ++    Y RQ  + G  + +++  A V + G+ GLG EIAKN+ L G+KS+ L 
Sbjct: 3   NKVEIDDS---LYSRQRYMLGDQAMQKMAHASVFLSGVGGLGVEIAKNLTLAGIKSITLH 59

Query: 358 DNEKLKQIDLYSQFLCPPDKI--GVNRAEGSLERARGLNPMVDVTSHTKGVDE 510
           D       DL SQF    D +    NRA  S  R   LNP V V + T  +DE
Sbjct: 60  DTRAASMADLGSQFFLREDDVTSSRNRAVASAGRVAELNPYVSVHTQTDALDE 112


>SB_4956| Best HMM Match : ThiF (HMM E-Value=0)
          Length = 213

 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 32/116 (27%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
 Frame = +1

Query: 256 RLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEKLKQIDLYSQFLCPPDKIGVNRA 435
           ++  +K+L++G  G+G E+ KN++LTG K++ L+D + +   +L  QFL     +G ++A
Sbjct: 20  KVNNSKILVVGAGGIGCELLKNLVLTGFKNIDLIDLDTIDVSNLNRQFLFHKQHVGKSKA 79

Query: 436 EGSLERARGLNPMVDVTSHTKGV--DELPDSFFTEFDVVCATGLKQEQFERINNAC 597
           + + E A   NP   + +    +   E    +F +FDVV      +     +N  C
Sbjct: 80  KVARESALRFNPDAKIVAIHDNITSPEYGIDYFKQFDVVMNALDNRAARNHVNRMC 135


>SB_22173| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 200

 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 32/116 (27%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
 Frame = +1

Query: 256 RLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEKLKQIDLYSQFLCPPDKIGVNRA 435
           ++  +K+L++G  G+G E+ KN++LTG K++ L+D + +   +L  QFL     +G ++A
Sbjct: 20  KVNNSKILVVGAGGIGCELLKNLVLTGFKNIDLIDLDTIDVSNLNRQFLFHKQHVGKSKA 79

Query: 436 EGSLERARGLNPMVDVTSHTKGV--DELPDSFFTEFDVVCATGLKQEQFERINNAC 597
           + + E A   NP   + +    +   E    +F +FDVV      +     +N  C
Sbjct: 80  KVARESALRFNPDAKIVAIHDNITSPEYGIDYFKQFDVVMNALDNRAARNHVNRMC 135


>SB_2839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 529

 Score = 53.2 bits (122), Expect = 3e-07
 Identities = 36/152 (23%), Positives = 71/152 (46%), Gaps = 3/152 (1%)
 Frame = +1

Query: 190 LSEAEAEQYDRQIRL--WGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDN 363
           L+ +E  +Y RQ+ L   G+  Q+ L+++ VL++G  GLG   A  +   G+  + L+D 
Sbjct: 52  LTNSEISRYSRQLILPEIGVKGQQSLKSSSVLVVGAGGLGCPAALYLAAAGIGCLGLVDY 111

Query: 364 EKLKQIDLYSQFLCPPDKIGVNRAEGSLERARGLNPMVDVTSHTKGVDELPD-SFFTEFD 540
           + +   +L+ Q L   D++ V + E + +    LN      +H   ++ +       ++D
Sbjct: 112 DVVDTSNLHRQVLHTEDRVEVPKVESAKQTLLRLNSDAQYNTHCLQLNSVNALDIINKYD 171

Query: 541 VVCATGLKQEQFERINNACRDSNKKFICGRRL 636
           V+            +N+AC  + K  + G  L
Sbjct: 172 VIVDATDNVATRYLLNDACVLAKKPLVSGSAL 203


>SB_22835| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 594

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +1

Query: 490 HTKGVDELPDSFFTEFDVVCATGLKQEQFERINNACRDSNKKFIC 624
           HT+GVDE   SF  E   +C  GL+ +   R +      NK F+C
Sbjct: 429 HTQGVDE--KSFVCE---ICGKGLRTKSSLRDHRKTHTDNKPFVC 468


>SB_46888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 626

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 21/69 (30%), Positives = 34/69 (49%)
 Frame = +1

Query: 166 MVGNNEVELSEAEAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVKS 345
           M+G     L     +  +  + LW L+ +K    A+V+IIG   LG   A ++   G+K 
Sbjct: 256 MIGQTHRYLRSDWLKVTEACVVLWPLN-KKLKEDAEVVIIGGGCLGVSTAYHLAKRGLKD 314

Query: 346 VCLLDNEKL 372
           V LL+  +L
Sbjct: 315 VVLLEKSEL 323


>SB_17747| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 139 SINLARYLDTTSILNNKLLVPNXLQPGGXH*LXERPPPTWGVSS 8
           +++L      T  + N+L+  N   PG    L ERPPP W  +S
Sbjct: 36  ALSLVPSTSVTLFIENRLMRSNSCSPGDPLVL-ERPPPRWSSNS 78


>SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25)
          Length = 1508

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +1

Query: 673 ITSTPREIVQHKATK--RGPDDEEKNARGNSFYNSKTSSYICPASK 804
           +   P+ I Q K  K  +GP  +  NAR +++ + KT S + P  +
Sbjct: 353 VIEEPKLIPQQKTKKALKGPPHQRHNARKSAYSSIKTMSQLLPGGQ 398


>SB_12793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -1

Query: 130 LARYLDTTSILNNKLLVPNXLQPGGXH*LXERPPPTWGVSS 8
           +  + DT    N   L+ N   PG    L ERPPP W  +S
Sbjct: 1   MKHFTDTLISANIVFLISNSCSPGDPLVL-ERPPPRWSSNS 40


>SB_9975| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-38)
          Length = 1101

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -1

Query: 106 SILNNKLLVPNXLQPGGXH*LXERPPPTWGVSS 8
           +ILN+  L  N   PG    L ERPPP W  +S
Sbjct: 654 AILNSLQLASNSCSPGDPLVL-ERPPPRWSSNS 685


>SB_6115| Best HMM Match : efhand (HMM E-Value=0.22)
          Length = 822

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 222 TNPPVGLRLAEETTCSQSINHRLVR 296
           TNP +  R  E TTC Q +N  LV+
Sbjct: 769 TNPELQARFEEWTTCKQYVNQDLVK 793


>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -1

Query: 772 YCYRNCFHGHFFLHHRARVWWLCVVQSPSEYS*STRSENM 653
           YC R C   H+  H     W +    +P  +S  T ++N+
Sbjct: 159 YCSRKCQQQHWPQHKTTCTWKISTTYTPEAHSTETSTQNV 198


>SB_3552| Best HMM Match : PH (HMM E-Value=0.15)
          Length = 486

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 570 AIRTNQQCLSRQQQKVYLRATSGGTYGYMFSDLVDHEYSEGDCTT 704
           A+RT+ Q  S ++ K + R  SGG  G   +D   H+    +C T
Sbjct: 312 AMRTDAQTSSLKRNKGHRRVKSGGGGGKFDTDTASHKDPLKECLT 356


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,925,459
Number of Sequences: 59808
Number of extensions: 567067
Number of successful extensions: 3732
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3725
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)