Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0392
         (850 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    24   2.0  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    24   2.0  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   6.2  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    22   8.2  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    22   8.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   8.2  

>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -1

Query: 796 RDIYSSTFYCYRNCFHGHFFLHHRAR 719
           R +     YC RN    H + +H++R
Sbjct: 37  RCVICERVYCSRNSLMTHIYTYHKSR 62


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 337 VKSVCLLDNEKLKQI 381
           VKSVC LD  KL Q+
Sbjct: 81  VKSVCTLDGNKLIQV 95


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/44 (22%), Positives = 19/44 (43%)
 Frame = +3

Query: 552 NRSQTRAIRTNQQCLSRQQQKVYLRATSGGTYGYMFSDLVDHEY 683
           +R  +  +  N   +S QQ+ + L+      YG   S +  + Y
Sbjct: 222 HRLSSHTLNHNSDKMSDQQENLTLKEVDNKVYGMALSPVTHNLY 265


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 94  CLILRLYPNIVLNLLKL*ITALQKMVGN 177
           C++ R Y +  L  +K     L+K+ GN
Sbjct: 109 CMVARKYIDCALEKMKFLDDELEKIAGN 136


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 94  CLILRLYPNIVLNLLKL*ITALQKMVGN 177
           C++ R Y +  L  +K     L+K+ GN
Sbjct: 109 CMVARKYIDCALEKMKFLDDELEKIAGN 136


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 467 FKPRALSNEPSARFTPILSGGHRNWEYR 384
           F+PRA  +    R+    S  + NWE++
Sbjct: 166 FEPRATDSRHYDRYKEEESNENYNWEHK 193


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,723
Number of Sequences: 438
Number of extensions: 5316
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)