Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0388
(780 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 33 0.061
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 32 0.080
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 30 0.32
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 29 0.57
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.75
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 28 1.7
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p... 27 2.3
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch... 27 2.3
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 27 4.0
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 26 5.3
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 5.3
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 5.3
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 7.0
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 26 7.0
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 26 7.0
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.2
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.2
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 32.7 bits (71), Expect = 0.061
Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 1/122 (0%)
Frame = +2
Query: 398 KSSEIPDAEAKSADI-KVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAII 574
K S+ P+ + + KVEEP+ + ++ + + TV + +E+ P A S
Sbjct: 446 KPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTF 505
Query: 575 PNMVKKIDLAPTVESDAAAIPEIKTPEAADAPKLADNPVDEDKPADISPDAPKLKLSRLM 754
VKK P+ E E P+A AP V+E +P +S D + L
Sbjct: 506 SEDVKK---EPSEEKKLEVSDE--APKA--APLAESKKVEEKEPFYVSKDKKDISAVNLA 558
Query: 755 TL 760
L
Sbjct: 559 DL 560
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 32.3 bits (70), Expect = 0.080
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 440 IKVEEPAAQPEDSK-TEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKID 598
I VE QPEDSK T+V +S +EK + + S D A + +++ +D
Sbjct: 525 IFVENALKQPEDSKQTKVSLMSENLSSKEKTAVPPRQKSRDIIASVTDVISSLD 578
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 30.3 bits (65), Expect = 0.32
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Frame = +2
Query: 470 EDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIPEIKT 649
E+S + +E+SK KP+ TD N K+I++A S A P+ T
Sbjct: 33 EESLPSILGEKSEVSKPFKPAVTDPS----------NAKKEINMAIESPSKKATSPKKAT 82
Query: 650 PEAADAPKLADNPVD-EDKPADISPDAPKLK 739
P AA AP A + VD + A ++P+ K +
Sbjct: 83 P-AAVAPVEATSAVDTSEAVASMTPNKRKAR 112
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 29.5 bits (63), Expect = 0.57
Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Frame = +2
Query: 443 KVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESD 622
+VEE A+ S E S KPSA AE D I V I L +
Sbjct: 289 RVEEKLAKRTQSFRREDNANRERSTSRKPSADKAE-KTDKTDAIAEKVSDIRLGDGEKKS 347
Query: 623 AAAIPEI---KTPEAADAPKLADNPVDEDK 703
+ E+ KTP DAP +E++
Sbjct: 348 SETDSEVAATKTPATEDAPATNAGEAEEEE 377
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.1 bits (62), Expect = 0.75
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +2
Query: 395 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSA 565
AK S D K + K + A+ PE SK V+ KEE S +++E S+ +
Sbjct: 41 AKQSSKTDVSPKKSK-KEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSES 96
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 27.9 bits (59), Expect = 1.7
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Frame = +2
Query: 410 IPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKP---SATDAEGSADSAAIIPN 580
+ ++ +KS+ + V+ + P+ S + QA E P S T+ A A + +
Sbjct: 527 LANSNSKSSPVAVQRVSTLPQASANK-QAKEMESKMSNSPTQKSKTEENNQAVRAILDAS 585
Query: 581 --MVKKIDL----APTVESDAAAIPEIKTP 652
M K+ DL PT ++++A++P+I P
Sbjct: 586 ATMEKQYDLHRLPTPTSQTESASVPQIANP 615
>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 607
Score = 27.5 bits (58), Expect = 2.3
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Frame = +2
Query: 476 SKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIPEI-KTP 652
+K+E A +A EE S + A K + V SDA + + KT
Sbjct: 252 AKSESAAGLAAYELEESSSLPAIVHGNNKNARKNIATLKSKIRDIVNSDANVVEQSEKTT 311
Query: 653 EAADAPKLADNPVDEDKPAD 712
E AD + +DE KPAD
Sbjct: 312 EDADEEPETEENLDEFKPAD 331
>SPBC30D10.08 |mgm101||mitochondrial nucleoid
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 267
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +3
Query: 450 KNQLLSLKIQKLKYKLPSLKFQKKKNL 530
KN LLS KI + Y+ S+++QK KN+
Sbjct: 40 KNGLLSPKITQRFYQNSSIQYQKDKNI 66
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 26.6 bits (56), Expect = 4.0
Identities = 18/72 (25%), Positives = 29/72 (40%)
Frame = +2
Query: 515 KEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIPEIKTPEAADAPKLADNPVD 694
KE+KP+ N KK D+A I ++ +P + DA +D P+
Sbjct: 486 KEKKPTKDLQSPLPSVEEDSSNRDKKTDIADLHTDSKVGIADVLSPISPDAALQSDGPLK 545
Query: 695 EDKPADISPDAP 730
+ K + S P
Sbjct: 546 KAKEPEESSITP 557
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 334 VFWGYIVLFGLWYSGYLVVTNW 269
VFW +IVL GL+Y Y V ++
Sbjct: 356 VFWIWIVLPGLYYQNYWQVAHF 377
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 26.2 bits (55), Expect = 5.3
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Frame = +2
Query: 401 SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGS----ADSAA 568
SS DA AKS + EPA +P + + ++T + EK + TD + A
Sbjct: 898 SSSKSDA-AKSIKPQKPEPALKPVEGTADPKSTKRNHQETEKTADTDVSSTEPVKRQKTA 956
Query: 569 IIPNMVKKIDLAPTVESDAAAIPEIKTPEAADAPKLADNPVDE 697
+ + V + ++ +V + P++ PK + D+
Sbjct: 957 DVNDDVGEEEVKQSVSEQVDSAQLTSEPKSESLPKSPEEKSDD 999
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 26.2 bits (55), Expect = 5.3
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +2
Query: 416 DAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADS 562
D + I E PA + K + + + S E+PS T EG+ D+
Sbjct: 601 DEYQRQLHIDFENPAVSASE-KLSTEEIIPQESNFEEPSTTKKEGNVDT 648
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 7.0
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Frame = +2
Query: 527 PSATDAEGSADSAAIIPNMVKKIDLAPTVESDA-AAIPEIKTPEAADAPKLADNPVDEDK 703
PS + +++ P L P+ S A P P+ A L+ P D
Sbjct: 1495 PSMIPSVAQQPPSSVAPATAPSSTLPPSQSSFAHVPSPAPPAPQHPSAAALSSAPADNSM 1554
Query: 704 PADISPDAPK 733
P SP AP+
Sbjct: 1555 PHRSSPYAPQ 1564
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.8 bits (54), Expect = 7.0
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +2
Query: 503 AEISKEEKPSATDAEGSADSAAIIPNMVKKI--DLAPTVESDAAAIPEIKTPEA 658
A K+ +PS + +A + PN VK + D+ P + +I PEA
Sbjct: 556 ASALKDREPSEKELPSTAKETSFAPNAVKTLDEDITPQSSNWQTVAKQIIFPEA 609
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 7.0
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +2
Query: 422 EAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSAD 559
++K + KVEE ++ D K + ++ KEEK TD++ +AD
Sbjct: 476 DSKETEDKVEETESKEADVKAKETDSIEVDDKEEK---TDSKETAD 518
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 419 AEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSA 556
AEA + D + P K V +VAE ++E + ++E A
Sbjct: 76 AEASTGDASTQSPETSENVVKNSVDESVAEKPEKEDLAVIESEDKA 121
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1379
Score = 25.4 bits (53), Expect = 9.2
Identities = 27/115 (23%), Positives = 45/115 (39%)
Frame = +2
Query: 395 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAII 574
+ S IP + S DI + AA + I + S+ + S +A ++
Sbjct: 941 SSSLHIPSHNSFS-DIHHRKIAAHAAAITAASEKLTPSIEETSYSSSKAHDASLSAATLV 999
Query: 575 PNMVKKIDLAPTVESDAAAIPEIKTPEAADAPKLADNPVDEDKPADISPDAPKLK 739
N K I APT + A +P++ P + L + + D+ DAP K
Sbjct: 1000 ANKDKLIH-APTPQVLAPVLPKVSLPH-RHSVSLGQIRGESEVEGDVFYDAPSDK 1052
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,321,875
Number of Sequences: 5004
Number of extensions: 38071
Number of successful extensions: 154
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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