Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0388
(780 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05900.1 68416.m00664 neurofilament protein-related similar t... 38 0.006
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 36 0.023
At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /... 35 0.053
At1g72150.1 68414.m08342 SEC14 cytosolic factor family protein /... 35 0.070
At5g09530.1 68418.m01103 hydroxyproline-rich glycoprotein family... 34 0.092
At4g20260.2 68417.m02960 DREPP plasma membrane polypeptide famil... 33 0.16
At4g20260.1 68417.m02959 DREPP plasma membrane polypeptide famil... 33 0.16
At3g49990.1 68416.m05466 expressed protein 32 0.37
At5g26200.1 68418.m03118 mitochondrial substrate carrier family ... 32 0.49
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 31 0.65
At5g63550.1 68418.m07976 expressed protein 31 1.1
At4g29060.1 68417.m04157 elongation factor Ts family protein sim... 31 1.1
At1g34590.1 68414.m04299 hypothetical protein 30 1.5
At1g12080.2 68414.m01397 expressed protein 30 1.5
At3g20280.2 68416.m02570 PHD finger family protein contains Pfam... 29 2.6
At3g20280.1 68416.m02569 PHD finger family protein contains Pfam... 29 2.6
At1g62480.1 68414.m07050 vacuolar calcium-binding protein-relate... 29 2.6
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 29 2.6
At3g10660.1 68416.m01282 calcium-dependent protein kinase isofor... 27 3.1
At5g03380.1 68418.m00291 heavy-metal-associated domain-containin... 29 3.5
At2g31270.1 68415.m03818 hydroxyproline-rich glycoprotein family... 29 3.5
At2g02790.1 68415.m00222 calmodulin-binding family protein very ... 29 3.5
At4g11860.1 68417.m01887 expressed protein contains Pfam domain ... 29 4.6
At3g43530.1 68416.m04621 hypothetical protein contains Pfam prof... 29 4.6
At2g45800.1 68415.m05696 LIM domain-containing protein similar t... 29 4.6
At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 29 4.6
At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon cat... 29 4.6
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 28 6.0
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 28 6.0
At1g76710.2 68414.m08928 SET domain-containing protein (ASHH1) l... 28 6.0
At1g76710.1 68414.m08927 SET domain-containing protein (ASHH1) l... 28 6.0
At1g12080.1 68414.m01396 expressed protein 28 6.0
At1g03100.1 68414.m00285 pentatricopeptide (PPR) repeat-containi... 28 6.0
At2g27120.1 68415.m03259 DNA-directed DNA polymerase epsilon cat... 28 8.0
At2g02170.1 68415.m00153 remorin family protein contains Pfam do... 28 8.0
>At3g05900.1 68416.m00664 neurofilament protein-related similar to
NF-180 (GI:632549) [Petromyzon marinus] similar to
Neurofilament triplet H protein (200 kDa neurofilament
protein) (Neurofilament heavy polypeptide) (NF-H)
(Swiss-Prot:P12036) [Homo sapiens]
Length = 673
Score = 38.3 bits (85), Expect = 0.006
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Frame = +2
Query: 416 DAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSA-------TDAEGSADSAAII 574
+ E + +K EE A E +K E++ + ++ EEK S T GSA + I
Sbjct: 260 ELETEVEVVKAEETAEATEQAKVELEGKLEDVIVEEKDSEINSKDEKTSESGSALCSEEI 319
Query: 575 PNMVKKIDLAPTVESDAAAIPEIKTPEAA--DAPKLADNPVDEDKPADIS 718
+ +++ + P E++ A I E A + + D P +E+KP++ S
Sbjct: 320 LSTIQESNTDPIKETEGDASYPIDVIEKAITEEKHVVDEPANEEKPSESS 369
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 36.3 bits (80), Expect = 0.023
Identities = 26/111 (23%), Positives = 52/111 (46%)
Frame = +2
Query: 413 PDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKK 592
P A AK+ +K ++ ++ +DS +E + +K KP+A D+ S D + + +
Sbjct: 141 PAAAAKNGSVKAKKESSSEDDSSSEDEPAKKPAAKIAKPAAKDSSSSDDDS----DEDSE 196
Query: 593 IDLAPTVESDAAAIPEIKTPEAADAPKLADNPVDEDKPADISPDAPKLKLS 745
+ T ++ AA + +++D +D +++KPA D K S
Sbjct: 197 DEKPATKKAAPAAAKAASSSDSSDED--SDEESEDEKPAQKKADTKASKKS 245
>At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein contains Pfam
PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
CRAL/TRIO, N-terminus; similar to SEC14-like protein 2
(Alpha-tocopherol associated protein) (TAP) (bTAP)
(Fragment) (SP:P58875) {Bos taurus}
Length = 683
Score = 35.1 bits (77), Expect = 0.053
Identities = 39/118 (33%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Frame = +2
Query: 413 PDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSA-----TDAEGSADSAAIIP 577
P E K + K EE + E+ KTE ++ AE +EEK +A T E + A I
Sbjct: 123 PVKEEKVEEKKTEETEEKKEEVKTEEKSLEAETKEEEKSAAPATVETKKEEILAAPAPIV 182
Query: 578 NMVKKID--LAPT-VESDAAA--IPEIKTPEAAD-APKLADNPVDED-KPADISPDAP 730
KK + +AP VE+ AA + E K E AP + V+E P + +P AP
Sbjct: 183 AETKKEETPVAPAPVETKPAAPVVAETKKEEILPAAPVTTETKVEEKVVPVETTPAAP 240
>At1g72150.1 68414.m08342 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein similar to
SEC14-like protein 2 (Alpha-tocopherol associated
protein) (TAP) (bTAP) (Fragment) (SP:P58875) {Bos
taurus}; similar to GI:807956 from [Saccharomyces
cerevisiae]; contains Pfam PF00650 : CRAL/TRIO domain;
contains Pfam PF03765 : CRAL/TRIO, N-terminus
Length = 573
Score = 34.7 bits (76), Expect = 0.070
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Frame = +2
Query: 422 EAKSADIKVEE--PAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKI 595
E + ++KVEE PA + + +A E EEKP AE + + A+
Sbjct: 145 EETTTEVKVEEEKPAVPAAEEEKSSEAAPVETKSEEKPE-EKAEVTTEKASSAEE----- 198
Query: 596 DLAPTVESDAAAIPEIKTPEAADAPKLADN-PVDEDKPAD 712
D TVE+ +I + PE+A AP + + V E +P +
Sbjct: 199 DGTKTVEAIEESIVSVSPPESAVAPVVVETVAVAEAEPVE 238
>At5g09530.1 68418.m01103 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 370
Score = 34.3 bits (75), Expect = 0.092
Identities = 42/158 (26%), Positives = 63/158 (39%), Gaps = 2/158 (1%)
Frame = +2
Query: 284 EVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEA-KSADIKVEEPA 460
E+P PE K ++ P+ +I K EIP E K +I +
Sbjct: 110 ELPKFPEIPKPEL-PKMPEIPKPELPKVPEIQKPELP-KMPEIPKPELPKFPEIPKPDLP 167
Query: 461 AQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNM-VKKIDLAPTVESDAAAIP 637
PE+SK EV + E K E P + IP + K+ P +E A +P
Sbjct: 168 KFPENSKPEVPKLM-ETEKPEAPKVPE----------IPKPELPKLPEVPKLE--APKVP 214
Query: 638 EIKTPEAADAPKLADNPVDEDKPADISPDAPKLKLSRL 751
EI+ PE P+L P + P+ PKL+ ++
Sbjct: 215 EIQKPELPKMPELPKMPEIQKPELPKLPEVPKLEAPKV 252
Score = 33.1 bits (72), Expect = 0.21
Identities = 39/135 (28%), Positives = 53/135 (39%)
Frame = +2
Query: 284 EVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAKSADIKVEEPAA 463
E+P +PE K + AP+ +I K E+P K +I+ E
Sbjct: 237 ELPKLPEVPKLE-APKVPEIQKPELPKMPELPKMPEIQKP-ELP----KMPEIQKPELPK 290
Query: 464 QPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIPEI 643
PE K E+ TV E+ K E P + IP V K +L E A+PEI
Sbjct: 291 VPEVPKPELP-TVPEVPKSEAPKFPEIP--KPELPKIPE-VPKPELPKVPEITKPAVPEI 346
Query: 644 KTPEAADAPKLADNP 688
PE P+L P
Sbjct: 347 PKPELPTMPQLPKLP 361
Score = 29.5 bits (63), Expect = 2.6
Identities = 32/116 (27%), Positives = 48/116 (41%)
Frame = +2
Query: 404 SEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNM 583
+E P+A K +I E PE K E V EI K E P + + I
Sbjct: 183 TEKPEAP-KVPEIPKPELPKLPEVPKLEAPK-VPEIQKPELPKMPELPKMPE---IQKPE 237
Query: 584 VKKIDLAPTVESDAAAIPEIKTPEAADAPKLADNPVDEDKPADISPDAPKLKLSRL 751
+ K+ P +E A +PEI+ PE P+L P + P+ K +L ++
Sbjct: 238 LPKLPEVPKLE--APKVPEIQKPELPKMPELPKMPEIQKPELPKMPEIQKPELPKV 291
>At4g20260.2 68417.m02960 DREPP plasma membrane polypeptide family
protein contains Pfam profile: PF05558 DREPP plasma
membrane polypeptide
Length = 225
Score = 33.5 bits (73), Expect = 0.16
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Frame = +2
Query: 407 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMV 586
E+ E ++K EEPA E +KTE T E KEE T +G A++
Sbjct: 133 EVKTKEIPVEEVKAEEPAKTEEPAKTE--GTSGE--KEEIVEET-KKGETPETAVVEEKK 187
Query: 587 KKIDLAPTVESDAAAIPE--IKTPEAADAPKLADNP 688
+++ + A A+ E +K PE +A+ P
Sbjct: 188 PEVEEKKEEATPAPAVVETPVKEPETTTTAPVAEPP 223
>At4g20260.1 68417.m02959 DREPP plasma membrane polypeptide family
protein contains Pfam profile: PF05558 DREPP plasma
membrane polypeptide
Length = 225
Score = 33.5 bits (73), Expect = 0.16
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Frame = +2
Query: 407 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMV 586
E+ E ++K EEPA E +KTE T E KEE T +G A++
Sbjct: 133 EVKTKEIPVEEVKAEEPAKTEEPAKTE--GTSGE--KEEIVEET-KKGETPETAVVEEKK 187
Query: 587 KKIDLAPTVESDAAAIPE--IKTPEAADAPKLADNP 688
+++ + A A+ E +K PE +A+ P
Sbjct: 188 PEVEEKKEEATPAPAVVETPVKEPETTTTAPVAEPP 223
>At3g49990.1 68416.m05466 expressed protein
Length = 502
Score = 32.3 bits (70), Expect = 0.37
Identities = 23/73 (31%), Positives = 33/73 (45%)
Frame = +2
Query: 410 IPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVK 589
+P A+ D+K E P A+P KT Q + E K+E+ +A AE A II K
Sbjct: 422 LPGRRAEQTDVKAEIPKAEPIKRKTHGQESKEE--KKERKNAVKAE--KREARIIKKQTK 477
Query: 590 KIDLAPTVESDAA 628
+ T + A
Sbjct: 478 MLYCGETQRAQRA 490
>At5g26200.1 68418.m03118 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 342
Score = 31.9 bits (69), Expect = 0.49
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = -1
Query: 219 LTESSILGATSRIG*AGTTSFSSATGIAKLTAAKA 115
+T+SS+ AT R+G + TTS + A G A LT+A A
Sbjct: 112 ITKSSVGQATVRLGLSDTTSLAVANGAAGLTSAVA 146
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 31.5 bits (68), Expect = 0.65
Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 2/104 (1%)
Frame = +2
Query: 428 KSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPS-ATDAEGSADSAAIIPNMVKKIDLA 604
K K E+P +PE K E A ++ KP + + S+ P K +
Sbjct: 469 KQESPKTEQPKPKPESPKQESPKQEAPKPEQPKPKPESPKQESSKQEPPKPEESPKPEPP 528
Query: 605 PTVESDAAAIPEIKTPEAADAPKLADNPVDEDKPADI-SPDAPK 733
ES P+ +TP+ ++PK + KP + P PK
Sbjct: 529 KPEESPKPQPPKQETPKPEESPKPQPPKQETPKPEESPKPQPPK 572
>At5g63550.1 68418.m07976 expressed protein
Length = 530
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = +2
Query: 407 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMV 586
E D + + +++VE+P+ + SK V+ + K+++PS A+GSA S +
Sbjct: 320 EKTDTDDEKDEVEVEKPSKKKSSSKKTVEESSGSKGKDKQPS---AKGSARSGEKSSKQI 376
Query: 587 KKIDLAP 607
K +P
Sbjct: 377 AKSTSSP 383
>At4g29060.1 68417.m04157 elongation factor Ts family protein
similar to SP|P35019 Elongation factor Ts (EF-Ts)
{Galdieria sulphuraria}; contains Pfam profiles PF00627:
UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
S1 RNA binding domain
Length = 953
Score = 30.7 bits (66), Expect = 1.1
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 25/130 (19%)
Frame = +2
Query: 413 PDAEAKSADIKVEEPAAQPED--------SKT------EVQATVAEISKEEKPSATDA-E 547
P+AEA +VEE P + S+T EV AT AE EK T+
Sbjct: 373 PEAEASVTSAEVEESVCVPAEVTSEEVPSSETPKVVEEEVIATKAEDDSPEKEEQTETLA 432
Query: 548 GSADSAAIIPNMVKKIDLAPTVESDA---AAIPEIKTPEAADAPK------LADNPVDED 700
+A++ ++P + + VE+ +A E+ +PEA + + +A+ PVDE
Sbjct: 433 AAAEAEEVVPPIPETKSEEEIVENSIPPNSATDEVSSPEALASEEVEKEQVVAETPVDEV 492
Query: 701 K-PADISPDA 727
K PA + +A
Sbjct: 493 KTPAPVVTEA 502
>At1g34590.1 68414.m04299 hypothetical protein
Length = 820
Score = 30.3 bits (65), Expect = 1.5
Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 1/117 (0%)
Frame = +2
Query: 410 IPDAEAKSADIKVEEPAAQPEDSKT-EVQATVAEISKEEKPSATDAEGSADSAAIIPNMV 586
IPDA A D + P A PE S+ V A S DA ++ +IP+
Sbjct: 436 IPDAAAP-VDAGLISPRAAPEASRDGNVIPDAAAPVDAGLISLRDAPEASRDGNVIPDAA 494
Query: 587 KKIDLAPTVESDAAAIPEIKTPEAADAPKLADNPVDEDKPADISPDAPKLKLSRLMT 757
+D AP+ +A P + EA A ++D K + ++ K K ++ T
Sbjct: 495 APVDAAPSEAQEAE--PSVAASEAVVALPVSDTAA--GKRVRVDDESSKKKKTKKKT 547
>At1g12080.2 68414.m01397 expressed protein
Length = 138
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/88 (25%), Positives = 43/88 (48%)
Frame = +2
Query: 401 SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPN 580
+ E+ EA+ D + E+ + +D KTEV + +EEK AE ++ A++
Sbjct: 57 NEEVVVEEAEKKDEETEKKTEE-KDEKTEVITETPVVEEEEK----KAEEVTETPAVVEE 111
Query: 581 MVKKIDLAPTVESDAAAIPEIKTPEAAD 664
KK ++ +++ AA E+ +A +
Sbjct: 112 -EKKTEVVEEKQTEVAAAEEVAVEKAEE 138
>At3g20280.2 68416.m02570 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 482
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +2
Query: 443 KVEEPAAQPEDSKTE-VQATVAEISKEEKPSATDAEG--SADSAAIIPNMVKKIDLAPTV 613
K E + P+ + + V E SK+ K + + +A A ++P+ I AP+V
Sbjct: 344 KPSESTSHPDSLNDKTISENVQESSKDAKVDSEACQNHPTASPATVVPDQDSTITAAPSV 403
Query: 614 ESDAAAIPEIKTP 652
+ +A KTP
Sbjct: 404 TQEDSAFNTEKTP 416
>At3g20280.1 68416.m02569 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 743
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +2
Query: 443 KVEEPAAQPEDSKTE-VQATVAEISKEEKPSATDAEG--SADSAAIIPNMVKKIDLAPTV 613
K E + P+ + + V E SK+ K + + +A A ++P+ I AP+V
Sbjct: 605 KPSESTSHPDSLNDKTISENVQESSKDAKVDSEACQNHPTASPATVVPDQDSTITAAPSV 664
Query: 614 ESDAAAIPEIKTP 652
+ +A KTP
Sbjct: 665 TQEDSAFNTEKTP 677
>At1g62480.1 68414.m07050 vacuolar calcium-binding protein-related
contains weak similarity to vacuolar calcium binding
protein [Raphanus sativus] gi|9049359|dbj|BAA99394
Length = 152
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = +2
Query: 284 EVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAKSADIKV-EEPA 460
E P + E KKD+ AP ++ + K E+ + + + A + V EE
Sbjct: 73 ETPEVVEIKKDEEAPVETPVV---VEDESKTEEVVEAKKEEEVEEKKTEEAPVVVEEEKK 129
Query: 461 AQPEDSKTEVQATV-AEISKEEK 526
+ E+ K V+A+V A + K ++
Sbjct: 130 PEAEEEKPAVEASVTAPVEKADE 152
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats, Pfam:PF00560;
contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 29.5 bits (63), Expect = 2.6
Identities = 24/109 (22%), Positives = 43/109 (39%)
Frame = +2
Query: 401 SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPN 580
SSE S+ + P P + T VQA + P+ + + S A P
Sbjct: 696 SSEPTQVPTPSSSESYQAPNLSPVQAPTPVQAPTTSSETSQVPTPSSESNQSPSQA--PT 753
Query: 581 MVKKIDLAPTVESDAAAIPEIKTPEAADAPKLADNPVDEDKPADISPDA 727
+ + APT S P + E +P+ ++ V+ +P ++P +
Sbjct: 754 PILEPVHAPTPNSKPVQSP-TPSSEPVSSPEQSEE-VEAPEPTPVNPSS 800
>At3g10660.1 68416.m01282 calcium-dependent protein kinase isoform 2
(CPK2) identical to calcium-dependent protein kinase
isoform 2 [Arabidopsis thaliana] gi|9837343|gb|AAG00535;
contains protein kinase domain, Pfam:PF00069; contains
EF hand domain (calcium-binding EF-hand), Pfam:PF00036,
INTERPRO:IPR002048
Length = 646
Score = 27.1 bits (57), Expect(2) = 3.1
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 407 EIPDAEAKSADIKVEEPAAQPED-SKTEVQATVAEISKEEKPSATDAE 547
E+P E+K ++ V+ +A+PE S+++ + T E + E KP T AE
Sbjct: 109 EVPPEESKR-EVVVQPESAKPETKSESKPETTKPETTSETKPE-TKAE 154
Score = 20.6 bits (41), Expect(2) = 3.1
Identities = 6/14 (42%), Positives = 10/14 (71%)
Frame = +2
Query: 296 IPEAKKDDIAPEDS 337
+PE K ++ PE+S
Sbjct: 102 VPEESKQEVPPEES 115
>At5g03380.1 68418.m00291 heavy-metal-associated domain-containing
protein similar to farnesylated protein ATFP2
[GI:4097545]; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 392
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/76 (23%), Positives = 33/76 (43%)
Frame = +2
Query: 500 VAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIPEIKTPEAADAPKLA 679
V ++ + K + G+ D + + KI P A P+ +TP ++ +
Sbjct: 51 VEDVKIDYKSNKLTVIGNVDPVEVRDKVADKIK-RPVELVSTVAPPKKETPPSSGGAEKK 109
Query: 680 DNPVDEDKPADISPDA 727
+P E+KPA+ P A
Sbjct: 110 PSPAAEEKPAEKKPAA 125
>At2g31270.1 68415.m03818 hydroxyproline-rich glycoprotein family
protein
Length = 571
Score = 29.1 bits (62), Expect = 3.5
Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 15/135 (11%)
Frame = +2
Query: 401 SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPN 580
+S++ + S +K A+P S+ + T KP++T A+ + I+P
Sbjct: 273 ASKLFSSPITSTPVKTTSSLAKPTSSQINIAPTPT------KPTSTPAKQTLSEINILPT 326
Query: 581 MVKKIDLAPTVESDAAAI---PEIKT--PEAADAP------KLADNPVDED----KPADI 715
VK + S A I P I PE A P LA P+ P DI
Sbjct: 327 PVKPVSTLAKFPSTPAIIDSTPVITATPPEFASTPARLMSTSLAARPLKRSNGHTNPDDI 386
Query: 716 SPDAPKLKLSRLMTL 760
S D P + R ++L
Sbjct: 387 SADPPTKLVRRSLSL 401
>At2g02790.1 68415.m00222 calmodulin-binding family protein very low
similarity to SP|P12036 Neurofilament triplet H protein
{Homo sapiens}; contains Pfam profile PF00612: IQ
calmodulin-binding motif
Length = 636
Score = 29.1 bits (62), Expect = 3.5
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Frame = +2
Query: 398 KSSEIPDAEAKSADIKVEEPAAQ----PEDSKTE-VQATVA---EISKEEKPSATDAEGS 553
K EI DA K ++ +EE + PED K + T++ ++ K+EK D +
Sbjct: 375 KKKEIADAVQK--ELPIEEVSVSLVDAPEDEKMNLIPVTISKESDLDKDEKSLVLD-KPE 431
Query: 554 ADSAAIIPNMVKKIDLAPTVESDAAAIPEIKTPEAADAPKLADNPVDEDKPADISPDAP 730
D K + T E D +A +I+ P+A + + + + KP+D P
Sbjct: 432 QDELRTAERDDKAEEELKTAERDDSAEEKIQEPDAQISSENGNVASENTKPSDRRASLP 490
>At4g11860.1 68417.m01887 expressed protein contains Pfam domain
PF04424: Protein of unknown function (DUF544)
Length = 682
Score = 28.7 bits (61), Expect = 4.6
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Frame = +2
Query: 428 KSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAP 607
KS D+ ++ +++ +T SKE T +E + + + +
Sbjct: 336 KSEDLNHDQLSSKQSGGETACDVENVSSSKEAIVDVTSSEALSVDKGNLESAKSESSSES 395
Query: 608 TVESDAAAI-PEIK-TPEAADAPKLADNPVDEDKP 706
++SDAA+I P++ + DAP PV D+P
Sbjct: 396 VLKSDAASIDPDLSCRSQHDDAPNAFIPPVSTDEP 430
>At3g43530.1 68416.m04621 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 615
Score = 28.7 bits (61), Expect = 4.6
Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 10/117 (8%)
Frame = +2
Query: 416 DAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDA-EGS---------ADSA 565
+ E + + ++++ AQ D++ EV EI KE +D +G+ A+S
Sbjct: 441 EREVREKETEIDKEVAQG-DNEREVGEKETEIDKEVGQGDSDIFDGNKDMELNKEVAEST 499
Query: 566 AIIPNMVKKIDLAPTVESDAAAIPEIKTPEAADAPKLADNPVDEDKPADISPDAPKL 736
+ K ++ + + A EI PE+ ++AD+ D++ P D D K+
Sbjct: 500 IGVAESEKDKEVTESEKDKEVAESEIGVPESEKDIEVADSEKDKEVPQDDEMDGGKV 556
>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 226
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 281 DEVPAIPEAKKDDIAPE 331
D+ +IPEAK+DD APE
Sbjct: 197 DDTASIPEAKEDDAAPE 213
>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to IF2
protein [Drosophila melanogaster] GI:7108770; contains
Pfam profile PF03144: Elongation factor Tu domain 2
Length = 1294
Score = 28.7 bits (61), Expect = 4.6
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Frame = +2
Query: 395 AKSSEIPDAEAKSADIKVEEPAAQPED-------SKTEVQATVAEISKEEKPSATDAEGS 553
A E P AE ++ VEE AAQPE + E + A K++K + E
Sbjct: 308 AALGETPAAERPASSTPVEEKAAQPEPVAPVENAGEKEGEEETAAAKKKKKKKEKEKEKK 367
Query: 554 ADSAAIIPNMVK 589
A +AA + V+
Sbjct: 368 AAAAAAATSSVE 379
>At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon
catalytic subunit, putative similar to SP|Q07864 DNA
polymerase epsilon, catalytic subunit A (EC 2.7.7.7)
(DNA polymerase II subunit A) {Homo sapiens}; contains
Pfam profiles: PF03175 DNA polymerase type B, organellar
and viral, PF00136 DNA polymerase family B, PF03104 DNA
polymerase family B, exonuclease domain
Length = 2271
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Frame = +2
Query: 557 DSAAIIPNMVKKIDLAPTVES-----DAAAIPEIKTPEAADAPKLADNPVDEDKPADISP 721
+S +I N+ + ++ A TVE + E+K KL D+P+ E+ P
Sbjct: 532 ESGQLIDNLGRDLEYAITVEGKMRMDSISNYDEVKDEIKEKLEKLRDDPIREEGPLIYHL 591
Query: 722 DAPKLKLSRLMTLRLQLKM 778
D + + ++T RLQ+ +
Sbjct: 592 DVAAMYPNIILTNRLQVHL 610
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Frame = +2
Query: 599 LAPTVESDAAAIPEIKTPEA----ADAPK-LADNPVDEDKPADISPDAP 730
L+P S A +P +P+ AD P+ L+ P D KP+ S +AP
Sbjct: 127 LSPKPPSPRAEVPRSLSPKPPSPRADLPRSLSPKPFDRSKPSSASANAP 175
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Frame = +2
Query: 599 LAPTVESDAAAIPEIKTPEA----ADAPK-LADNPVDEDKPADISPDAP 730
L+P S A +P +P+ AD P+ L+ P D KP+ S +AP
Sbjct: 126 LSPKPPSPRAEVPRSLSPKPPSPRADLPRSLSPKPFDRSKPSSASANAP 174
>At1g76710.2 68414.m08928 SET domain-containing protein (ASHH1) low
similarity to huntingtin interacting protein 1 [Homo
sapiens] GI:12697196; contains Pfam profile PF00856: SET
domain; identical to cDNA ASH1-like protein 1 (ASHH1)
partial cds GI:15488417
Length = 492
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/65 (24%), Positives = 28/65 (43%)
Frame = +2
Query: 512 SKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIPEIKTPEAADAPKLADNPV 691
+ EEK E +S A+ N+ ++ D PT + +KT + D L+ N
Sbjct: 276 TNEEKEKDISTENHLESTAL--NIQQQSDSTPTPMEEDVVTETVKTETSEDMKLLSQNSQ 333
Query: 692 DEDKP 706
++ P
Sbjct: 334 EDSSP 338
>At1g76710.1 68414.m08927 SET domain-containing protein (ASHH1) low
similarity to huntingtin interacting protein 1 [Homo
sapiens] GI:12697196; contains Pfam profile PF00856: SET
domain; identical to cDNA ASH1-like protein 1 (ASHH1)
partial cds GI:15488417
Length = 492
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/65 (24%), Positives = 28/65 (43%)
Frame = +2
Query: 512 SKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIPEIKTPEAADAPKLADNPV 691
+ EEK E +S A+ N+ ++ D PT + +KT + D L+ N
Sbjct: 276 TNEEKEKDISTENHLESTAL--NIQQQSDSTPTPMEEDVVTETVKTETSEDMKLLSQNSQ 333
Query: 692 DEDKP 706
++ P
Sbjct: 334 EDSSP 338
>At1g12080.1 68414.m01396 expressed protein
Length = 104
Score = 28.3 bits (60), Expect = 6.0
Identities = 22/89 (24%), Positives = 42/89 (47%)
Frame = +2
Query: 398 KSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIP 577
K+ E E + D + E+ + +D KTEV + +EEK AE ++ A++
Sbjct: 22 KTVEETVVETEKKDEETEKKTEE-KDEKTEVITETPVVEEEEK----KAEEVTETPAVVE 76
Query: 578 NMVKKIDLAPTVESDAAAIPEIKTPEAAD 664
KK ++ +++ AA E+ +A +
Sbjct: 77 E-EKKTEVVEEKQTEVAAAEEVAVEKAEE 104
>At1g03100.1 68414.m00285 pentatricopeptide (PPR) repeat-containing
protein low similarity to CRP1 [Zea mays] GI:3289002;
contains Pfam profile PF01535: PPR repeat
Length = 793
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 417 MLKQNLLILKWKNQLLSLKIQKLKYKLPSLKFQKKKNL 530
M K+N+ + K+K ++L LK K YK + K Q + L
Sbjct: 740 MEKKNMFVDKYKYRMLFLKYHKTAYKGKAPKVQSESQL 777
>At2g27120.1 68415.m03259 DNA-directed DNA polymerase epsilon
catalytic subunit, putative similar to SP|Q07864 DNA
polymerase epsilon, catalytic subunit A (EC 2.7.7.7)
(DNA polymerase II subunit A) {Homo sapiens}; contains
Pfam profiles: PF03175 DNA polymerase type B, organellar
and viral, PF00136 DNA polymerase family B, PF03104 DNA
polymerase family B, exonuclease domain
Length = 2138
Score = 27.9 bits (59), Expect = 8.0
Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Frame = +2
Query: 488 VQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVES-----DAAAIPEIKTP 652
V+ + + + + P++ + SA +I N+ + ++ A TVE + E+K
Sbjct: 508 VECLQSGVFRSDIPTSFKLDASAYQQ-LIDNLGRDLEYAITVEGKMRMDSVSNFDEVKEV 566
Query: 653 EAADAPKLADNPVDEDKPADISPDAPKLKLSRLMTLRLQ 769
KL D+P+ E+ P D + + ++T RLQ
Sbjct: 567 IREKLEKLRDDPIREEGPLIYHLDVAAMYPNIILTNRLQ 605
>At2g02170.1 68415.m00153 remorin family protein contains Pfam
domain, PF03763: Remorin, C-terminal region
Length = 486
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +2
Query: 416 DAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSA 565
+AE K ++KVE + +D + AT+ E EEK +A +A+ +A
Sbjct: 411 EAEMKKTEVKVERIKGRAQDRLMKKLATI-ERKAEEKRAAAEAKKDHQAA 459
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,097,611
Number of Sequences: 28952
Number of extensions: 196772
Number of successful extensions: 740
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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