Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0386
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    24   1.0  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    24   1.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    24   1.0  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    23   1.8  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    23   3.2  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    23   3.2  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    22   5.5  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   7.3  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   7.3  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   7.3  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   7.3  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   7.3  
AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax pr...    21   7.3  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   7.3  

>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 633 NISALLILYFFFFDGCSGLIESTSSPTVASVLVPV 529
           NISA  I Y F    C  +I+S S     ++ VPV
Sbjct: 138 NISATYICYAFGKFSCKVMIQSVSFAFPINLSVPV 172


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 633 NISALLILYFFFFDGCSGLIESTSSPTVASVLVPV 529
           NISA  I Y F    C  +I+S S     ++ VPV
Sbjct: 371 NISATYICYAFGKFSCKVMIQSVSFAFPINLSVPV 405


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 633 NISALLILYFFFFDGCSGLIESTSSPTVASVLVPV 529
           NISA  I Y F    C  +I+S S     ++ VPV
Sbjct: 371 NISATYICYAFGKFSCKVMIQSVSFAFPINLSVPV 405


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 295 NKVSFH-ILLTIYYYN*WVICNIYIL*DLFCC 203
           NK+  H +LLTI  Y  W I  +Y L  L+ C
Sbjct: 229 NKLYGHQLLLTILTYLIWTIYEMYHLAILWSC 260


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 207 VVESVVKVSPNFTTPQSSISAGKL 136
           V+E   KV PNF T +     GKL
Sbjct: 98  VIEKPRKVLPNFKTDEPICPDGKL 121


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = +2

Query: 305 KFEETKYEVFSPEELWKQFLHVRLNTVLPLRCEATISGVKNSLQNKRK 448
           +FE++K+E F    +    L    N  L + C+   S     ++N +K
Sbjct: 226 RFEKSKFEPFLISNISLVSLIFLFNCTLIIMCDCVRSEASKVVKNAQK 273


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +2

Query: 158 LCGVVKFGETL 190
           LC VVK+G+TL
Sbjct: 112 LCKVVKYGQTL 122


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 60  VPSYISPYKHP 28
           VP ++SPY HP
Sbjct: 287 VPYHMSPYGHP 297


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 60  VPSYISPYKHP 28
           VP ++SPY HP
Sbjct: 287 VPYHMSPYGHP 297


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 60  VPSYISPYKHP 28
           VP ++SPY HP
Sbjct: 287 VPYHMSPYGHP 297


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 60  VPSYISPYKHP 28
           VP ++SPY HP
Sbjct: 243 VPYHMSPYGHP 253


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 60  VPSYISPYKHP 28
           VP ++SPY HP
Sbjct: 287 VPYHMSPYGHP 297


>AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax
           protein.
          Length = 100

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 60  VPSYISPYKHP 28
           VP ++SPY HP
Sbjct: 75  VPYHMSPYGHP 85


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 60  VPSYISPYKHP 28
           VP ++SPY HP
Sbjct: 287 VPYHMSPYGHP 297


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,002
Number of Sequences: 336
Number of extensions: 3527
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)