Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0386
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease Pnu1|Schizosa...    29   0.64 
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    29   0.85 
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    27   3.4  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   3.4  
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    26   4.5  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    26   6.0  
SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   6.0  

>SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease
           Pnu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -3

Query: 573 ESTSSPTVASVLVPVKPTSDATPNK 499
           E TSSP+VA+ ++P KP +D  P K
Sbjct: 243 EPTSSPSVAAFVLPNKPIADNFPLK 267


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +2

Query: 512 ASDVGLTGTSTEATVGELVDSMSPEQPSKKKKYNINNAEILPVSLILKVTKDIL 673
           ASD    G + +    + V ++ P   S    Y+IN+A+  P S  +KV ++IL
Sbjct: 342 ASDKRKEGFTEKEETADAVVTLVPSHSSSPVNYSINSAKSTPAS--IKVNEEIL 393


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 614  INNAEILPVSLILKVTKDILSDKLV 688
            + NA +LP  ++ K TKD+L +K V
Sbjct: 1059 VENASLLPNEVVNKQTKDLLYEKRV 1083


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +2

Query: 107 EKNSYSQLLLNFPAEIELCGVVKFGETLTTDSTTKEILQDVDITDNP 247
           + ++ + LL     EIEL GV      +    TT+  LQ +D+   P
Sbjct: 11  QDDAITALLAIASPEIELLGVTTVAGNVPVSMTTRNALQMLDLAGRP 57


>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 374 LNTVLPLRCEATISGVKNSLQNKRKKIASGQVSFHI 481
           L   +  + +  ISG  NS+  K K++++G+V + I
Sbjct: 234 LQADIEFKVKGFISGTYNSIAGKVKRVSTGEVLYKI 269


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = -1

Query: 608 IFFSSMAVQDSLNQ-QVPQQ*LLCLFQSSPHLTLLQ--TNILVYCLYEMTLDLKQSFSSY 438
           + FS  +++ SL + Q+P      L      L L    TN+  Y LYE  LD+ + FS  
Sbjct: 12  VLFSPESIEQSLKRCQLPST----LLYDEKGLRLFDEITNLKEYYLYESELDILKKFSDS 67

Query: 437 FA 432
            A
Sbjct: 68  IA 69


>SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 159

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = +2

Query: 269 EKDMKAHFI----VHDKFEETKYEVFSPEELWKQFLH 367
           E D K H I    + D+FEE   + F P + +K+ +H
Sbjct: 59  ESDEKFHPICIDNIPDEFEEIDAKTFDPHQKYKKVIH 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,865,818
Number of Sequences: 5004
Number of extensions: 59438
Number of successful extensions: 186
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)