Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0386
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0460 + 19360075-19360320,19361189-19361368                       32   0.38 
12_01_0016 + 125052-127145                                             29   3.5  

>12_02_0460 + 19360075-19360320,19361189-19361368
          Length = 141

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 19/59 (32%), Positives = 32/59 (54%)
 Frame = +2

Query: 410 ISGVKNSLQNKRKKIASGQVSFHIDSTQVYLFGVASDVGLTGTSTEATVGELVDSMSPE 586
           +S + N L+   K IASG+ +     T ++L  +A DVG+T       +  LV++ +PE
Sbjct: 52  VSFIANKLETIWKGIASGEYTNFSLKTTLFLCSLAEDVGVT-PHVVLVIAGLVEACAPE 109


>12_01_0016 + 125052-127145
          Length = 697

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = -3

Query: 618 LILYFFFFDGC-SGLIESTSSPTVASVLVPVKPTSDATPNKYTCVLSI*NDT*PEAIFFL 442
           L+L  FFF G  SG   + SSP  AS       T+DA       +LS+  D   +A + L
Sbjct: 23  LVLVPFFFSGSGSGTNNTASSPAAASSTHTHTHTADANAQLDAHLLSLLRDGHTDAAYHL 82

Query: 441 LFCSEFLTPEMVASHR 394
              +  L    V++ R
Sbjct: 83  FASNPSLPLSPVSASR 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,891,093
Number of Sequences: 37544
Number of extensions: 319343
Number of successful extensions: 806
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)