Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0386
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38308| Best HMM Match : Vicilin_N (HMM E-Value=0.26)                29   3.6  
SB_55999| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_17718| Best HMM Match : Ribosomal_L2 (HMM E-Value=7.3)              29   4.8  
SB_8470| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.3  
SB_47355| Best HMM Match : Halo_GVPC (HMM E-Value=3.2)                 28   8.4  

>SB_38308| Best HMM Match : Vicilin_N (HMM E-Value=0.26)
          Length = 286

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
 Frame = +2

Query: 95  ETETEKNSYSQLLLNFPAEI-ELCGVVK--FGETL-TTDSTTKEI---LQDVDITDNPLI 253
           + ET++    Q L     E  ++  +++  F + L TTD   K +   L ++       +
Sbjct: 73  QKETQQQDSEQTLTRLQEERGKVADIIRQEFADRLVTTDEDNKRLKTELSEMRARHRLEL 132

Query: 254 IIINREKDMKAHFIVHDKFEETKYEVFSPEELWKQFLHVRLN 379
             I REK+ +   +   K    +   F  E+LWK   + RLN
Sbjct: 133 ERITREKEEEMEQVHTSKVPSVRKHPFPSEDLWKPMRYFRLN 174


>SB_55999| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/33 (30%), Positives = 23/33 (69%)
 Frame = +2

Query: 407 TISGVKNSLQNKRKKIASGQVSFHIDSTQVYLF 505
           T  G +N   +  +++ +GQ+SF+ ++TQ++L+
Sbjct: 33  TFHGRRNRRFHVSRRVKNGQISFNENTTQIFLY 65


>SB_17718| Best HMM Match : Ribosomal_L2 (HMM E-Value=7.3)
          Length = 112

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/33 (30%), Positives = 23/33 (69%)
 Frame = +2

Query: 407 TISGVKNSLQNKRKKIASGQVSFHIDSTQVYLF 505
           T  G +N   +  +++ +GQ+SF+ ++TQ++L+
Sbjct: 28  TFHGRRNRRFHVTRRVKNGQISFNENTTQIFLY 60


>SB_8470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3133

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 194 TDSTTKEILQDVDITDNPLIIIINREKDMKAHFIVHDKFEETKYEVFSPEE-LW 352
           TD   + ++ ++ I D+P +++     D+K   +  D  +E K   FS ++ LW
Sbjct: 38  TDKNGRYLILEITIEDSPFVLVNYAPNDIKQQQLFFDTVKE-KLRAFSDKQILW 90


>SB_47355| Best HMM Match : Halo_GVPC (HMM E-Value=3.2)
          Length = 382

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 194 TDSTTKEILQDVDITDNPLIIIINREK-DMKAHFIVHDK 307
           TD    ++  D D+TD  L   IN  K D++AH + HDK
Sbjct: 151 TDVQAHKVKHDKDVTD--LWAAINNTKTDVQAHKVKHDK 187


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,470,462
Number of Sequences: 59808
Number of extensions: 404713
Number of successful extensions: 1011
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)