Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0386
         (698 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U89337-3|AAB47488.1| 4289|Homo sapiens tenascin X protein.             31   4.0  
AL049547-2|CAB89296.1| 4288|Homo sapiens dJ34F7.1.1 (tenascin XB...    31   4.0  
AF019413-1|AAB67981.1| 1697|Homo sapiens tenascin X protein.           31   4.0  
BC101189-1|AAI01190.1|  913|Homo sapiens ubiquitin specific pept...    31   5.2  

>U89337-3|AAB47488.1| 4289|Homo sapiens tenascin X protein.
          Length = 4289

 Score = 31.1 bits (67), Expect = 4.0
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +2

Query: 506  GVASDVGLTGTSTEATVGELVDSMSPEQPSKKKKYNINNAEILPVSLIL 652
            G  S VG+T    EA   + V +M+PE P K +   +   +  P SL L
Sbjct: 3075 GPVSAVGVTAPKDEAETTQAVPTMTPEPPIKPRLGELTVTDATPDSLSL 3123


>AL049547-2|CAB89296.1| 4288|Homo sapiens dJ34F7.1.1 (tenascin XB
            (isoform 1)) protein.
          Length = 4288

 Score = 31.1 bits (67), Expect = 4.0
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +2

Query: 506  GVASDVGLTGTSTEATVGELVDSMSPEQPSKKKKYNINNAEILPVSLIL 652
            G  S VG+T    EA   + V +M+PE P K +   +   +  P SL L
Sbjct: 3074 GPVSAVGVTAPKDEAETTQAVPTMTPEPPIKPRLGELTVTDATPDSLSL 3122


>AF019413-1|AAB67981.1| 1697|Homo sapiens tenascin X protein.
          Length = 1697

 Score = 31.1 bits (67), Expect = 4.0
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +2

Query: 506 GVASDVGLTGTSTEATVGELVDSMSPEQPSKKKKYNINNAEILPVSLIL 652
           G  S VG+T    EA   + V +M+PE P K +   +   +  P SL L
Sbjct: 483 GPVSAVGVTAPKDEAETTQAVPTMTPEPPIKPRLGELTVTDATPDSLSL 531


>BC101189-1|AAI01190.1|  913|Homo sapiens ubiquitin specific
           peptidase 26 protein.
          Length = 913

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 9/99 (9%)
 Frame = +2

Query: 422 KNSLQNKRKKIASGQVSFHIDSTQVYLFGVASDVGLTG--------TSTEATVGELVDSM 577
           KNS  N+ + + SG  +F       +L     D  L           S+  T    VD  
Sbjct: 631 KNSKPNELESVYSGDRAFIEKEPLAHLMTYLEDTSLCQFHKAGGKPASSPGTPLSKVDFQ 690

Query: 578 S-PEQPSKKKKYNINNAEILPVSLILKVTKDILSDKLVK 691
           + PE P +KK  N+  ++ +    I+  TKD+  DK ++
Sbjct: 691 TVPENPKRKK--NVKTSKFVAFDRIINPTKDLYEDKNIR 727


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,575,715
Number of Sequences: 237096
Number of extensions: 1901958
Number of successful extensions: 4282
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4282
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)