Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0386
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74473-2|CAA98949.2|  319|Caenorhabditis elegans Hypothetical pr...    31   0.79 
Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U97550-4|AAK18978.2|  773|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z81581-16|CAI46620.1|  656|Caenorhabditis elegans Hypothetical p...    28   7.4  
Z81581-15|CAI46619.1|  729|Caenorhabditis elegans Hypothetical p...    28   7.4  
Z81143-11|CAI46592.1|  656|Caenorhabditis elegans Hypothetical p...    28   7.4  
Z81143-10|CAB03514.2|  729|Caenorhabditis elegans Hypothetical p...    28   7.4  
DQ372920-1|ABD16184.1|  729|Caenorhabditis elegans Krev interact...    28   7.4  
AC084197-18|AAM44394.1|  546|Caenorhabditis elegans Hypothetical...    28   7.4  

>Z74473-2|CAA98949.2|  319|Caenorhabditis elegans Hypothetical
           protein F56H9.1 protein.
          Length = 319

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 325 IFRFFKFIMNNKVSFHILLTIYYYN*WVICNIYIL 221
           +F FFKF+   K SF+IL T    + +++  +Y L
Sbjct: 27  LFMFFKFLSYEKTSFYILCTSKTLSNFILLTVYFL 61


>Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical protein
            B0365.7 protein.
          Length = 2769

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 12/127 (9%)
 Frame = +2

Query: 44   LMYDGTLLVVGFSLESFETETEKNSY-----SQLLLNFPAEIELCGVVKFGETLTTDSTT 208
            L++ GT+ +   +LE     TEK+ Y     S L  +F +EI L     F   L++   T
Sbjct: 1208 LLFGGTVFIEEKNLEELWKSTEKDVYTCHSLSNLKYHFESEITLNSSFMF--LLSSSFQT 1265

Query: 209  KEILQDVDITDNPLI-------IIINREKDMKAHFIVHDKFEETKYEVFSPEELWKQFLH 367
               LQ  + + N +I        I +REK ++   I+ D FE      F    LWK +L 
Sbjct: 1266 ARSLQFGNSSYNKVIDEKLSLNSIAHREKKVQKFQIISD-FE----NYFGSRGLWKNYLE 1320

Query: 368  VRLNTVL 388
              +  +L
Sbjct: 1321 AMICRIL 1327


>Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical protein
            B0365.7 protein.
          Length = 2769

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 12/127 (9%)
 Frame = +2

Query: 44   LMYDGTLLVVGFSLESFETETEKNSY-----SQLLLNFPAEIELCGVVKFGETLTTDSTT 208
            L++ GT+ +   +LE     TEK+ Y     S L  +F +EI L     F   L++   T
Sbjct: 1208 LLFGGTVFIEEKNLEELWKSTEKDVYTCHSLSNLKYHFESEITLNSSFMF--LLSSSFQT 1265

Query: 209  KEILQDVDITDNPLI-------IIINREKDMKAHFIVHDKFEETKYEVFSPEELWKQFLH 367
               LQ  + + N +I        I +REK ++   I+ D FE      F    LWK +L 
Sbjct: 1266 ARSLQFGNSSYNKVIDEKLSLNSIAHREKKVQKFQIISD-FE----NYFGSRGLWKNYLE 1320

Query: 368  VRLNTVL 388
              +  +L
Sbjct: 1321 AMICRIL 1327


>U97550-4|AAK18978.2|  773|Caenorhabditis elegans Hypothetical
           protein T20F7.1 protein.
          Length = 773

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = +2

Query: 563 LVDSMSPEQPSKKKKYNINNAEILPVSLILKVTKDILSDKLVK 691
           +VD M  E  +  ++Y + N E+  V++ ++  KD+   K+++
Sbjct: 471 IVDKMREENDASDRRYYLQNYEVRNVAIKIEKYKDLYKKKVLQ 513


>Z81581-16|CAI46620.1|  656|Caenorhabditis elegans Hypothetical
           protein ZK265.1b protein.
          Length = 656

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +2

Query: 545 EATVGELVDSMSPEQPSKKKKYNINNAEILPVSLILKVTKDILSDKLVK 691
           EATVGE++D ++ E    +++ N     +   S+ L++  D L D  +K
Sbjct: 448 EATVGEVLDRLAEETQLNREQMNCFALFVYSESMSLQLQPDSLIDGKLK 496


>Z81581-15|CAI46619.1|  729|Caenorhabditis elegans Hypothetical
           protein ZK265.1a protein.
          Length = 729

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +2

Query: 545 EATVGELVDSMSPEQPSKKKKYNINNAEILPVSLILKVTKDILSDKLVK 691
           EATVGE++D ++ E    +++ N     +   S+ L++  D L D  +K
Sbjct: 448 EATVGEVLDRLAEETQLNREQMNCFALFVYSESMSLQLQPDSLIDGKLK 496


>Z81143-11|CAI46592.1|  656|Caenorhabditis elegans Hypothetical
           protein ZK265.1b protein.
          Length = 656

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +2

Query: 545 EATVGELVDSMSPEQPSKKKKYNINNAEILPVSLILKVTKDILSDKLVK 691
           EATVGE++D ++ E    +++ N     +   S+ L++  D L D  +K
Sbjct: 448 EATVGEVLDRLAEETQLNREQMNCFALFVYSESMSLQLQPDSLIDGKLK 496


>Z81143-10|CAB03514.2|  729|Caenorhabditis elegans Hypothetical
           protein ZK265.1a protein.
          Length = 729

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +2

Query: 545 EATVGELVDSMSPEQPSKKKKYNINNAEILPVSLILKVTKDILSDKLVK 691
           EATVGE++D ++ E    +++ N     +   S+ L++  D L D  +K
Sbjct: 448 EATVGEVLDRLAEETQLNREQMNCFALFVYSESMSLQLQPDSLIDGKLK 496


>DQ372920-1|ABD16184.1|  729|Caenorhabditis elegans Krev interaction
           trapped/cerebralcavernous malformation 1 isoform a
           protein.
          Length = 729

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +2

Query: 545 EATVGELVDSMSPEQPSKKKKYNINNAEILPVSLILKVTKDILSDKLVK 691
           EATVGE++D ++ E    +++ N     +   S+ L++  D L D  +K
Sbjct: 448 EATVGEVLDRLAEETQLNREQMNCFALFVYSESMSLQLQPDSLIDGKLK 496


>AC084197-18|AAM44394.1|  546|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.4 protein.
          Length = 546

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
 Frame = +2

Query: 116 SYSQLLLNFPAEIELCGV-VKFGETLTTDSTTKEILQDVDITDNPLIIIINREKDMKAHF 292
           +Y +  L +P E   C V V  G T+T+   T  +       D  L II +       H 
Sbjct: 404 AYHEAKLLWPDENVNCVVSVGNGRTVTSVEPTPTVFS-TSFQDKLLRIIDSATDTEGVHM 462

Query: 293 IVHDKFEETKYEVFSP 340
            VHD   E+ Y  F+P
Sbjct: 463 NVHDMLPESVYYRFNP 478


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,738,062
Number of Sequences: 27780
Number of extensions: 328457
Number of successful extensions: 921
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)