Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0386
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   6.4  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   6.4  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    21   8.5  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   8.5  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   8.5  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   8.5  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   8.5  

>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 593 SKKKKYNINNAEILPV 640
           SKK  YNI N E +PV
Sbjct: 320 SKKLYYNIINIEQIPV 335


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 593 SKKKKYNINNAEILPV 640
           SKK  YNI N E +PV
Sbjct: 331 SKKLYYNIINIEQIPV 346


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 60  VPSYISPYKHP 28
           VP ++SPY HP
Sbjct: 75  VPYHMSPYGHP 85


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 89  SFETETEKNSYSQLLLNFPAEIELCGVVKF 178
           +F  ETE N     +LNF  E ++  +  F
Sbjct: 491 AFSRETEDNGSLYAILNFSNEEQIVDLKAF 520


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 593 SKKKKYNINNAEILPVSLILKV 658
           +KK  YNIN  E +PV + + V
Sbjct: 105 NKKLYYNINYIEQIPVPVPVPV 126


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 89  SFETETEKNSYSQLLLNFPAEIELCGVVKF 178
           +F  ETE N     +LNF  E ++  +  F
Sbjct: 491 AFSRETEDNGSLYAILNFSNEEQIVDLKAF 520


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 624 ALLILYFFFFDGCSG 580
           A+L+   F FD CSG
Sbjct: 10  AVLLAIVFLFDKCSG 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,040
Number of Sequences: 438
Number of extensions: 3912
Number of successful extensions: 33
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)