Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0386
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03410.2 68417.m00465 peroxisomal membrane protein-related co...    29   2.2  
At4g03410.1 68417.m00464 peroxisomal membrane protein-related co...    29   2.2  
At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family...    29   2.2  
At1g69545.1 68414.m07997 leucine-rich repeat family protein cont...    29   3.0  
At5g35690.1 68418.m04267 expressed protein                             29   3.9  
At5g08500.1 68418.m01007 transmembrane CLPTM1 family protein con...    29   3.9  
At1g75290.1 68414.m08746 isoflavone reductase, putative similar ...    29   3.9  
At5g18840.1 68418.m02239 sugar transporter, putative similar to ...    27   9.0  
At4g01830.1 68417.m00240 multidrug resistance P-glycoprotein, pu...    27   9.0  

>At4g03410.2 68417.m00465 peroxisomal membrane protein-related
           contains weak similarity to Swiss-Prot:P42925 22 kDa
           peroxisomal membrane protein [Mus musculus]
          Length = 361

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
 Frame = +2

Query: 293 IVHDKFEE-TKYEV--FSPEELWKQFLHVRLNTVLPLRCEATISGVKNSLQNKRKKIASG 463
           I HD ++  T YE+  ++PE  W  F + ++    P+  +  ISG+  SL +   +   G
Sbjct: 106 IDHDYWQGWTLYEILRYAPEHNW--FAYEQILKTNPVLAKMAISGIVYSLGDWIAQCYEG 163

Query: 464 QVSFHIDSTQVYLFGV 511
           +  F  D T+V   G+
Sbjct: 164 KPLFEFDRTRVLRSGL 179


>At4g03410.1 68417.m00464 peroxisomal membrane protein-related
           contains weak similarity to Swiss-Prot:P42925 22 kDa
           peroxisomal membrane protein [Mus musculus]
          Length = 317

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
 Frame = +2

Query: 293 IVHDKFEE-TKYEV--FSPEELWKQFLHVRLNTVLPLRCEATISGVKNSLQNKRKKIASG 463
           I HD ++  T YE+  ++PE  W  F + ++    P+  +  ISG+  SL +   +   G
Sbjct: 106 IDHDYWQGWTLYEILRYAPEHNW--FAYEQILKTNPVLAKMAISGIVYSLGDWIAQCYEG 163

Query: 464 QVSFHIDSTQVYLFGV 511
           +  F  D T+V   G+
Sbjct: 164 KPLFEFDRTRVLRSGL 179


>At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 589

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 278 MKAHFIVHDKFEETKYEVFSPEELWKQFLHVRLNTVLPL 394
           +K   I  DK + TKY + S E+LWK  + V  +  +PL
Sbjct: 211 LKLMTIKRDKDQFTKYTITSLEKLWKPKIFVEPDLGIPL 249


>At1g69545.1 68414.m07997 leucine-rich repeat family protein
           contains Pfam PF00560: Leucine Rich Repeat domains;
           similar to disease resistance protein RPP1-WsA
           (GI:3860163)[Arabidopsis thaliana]
          Length = 703

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 648 IKLTGNISALLILYFFFFDGCSGLIESTSS 559
           ++L  +I  L+ L  F+F GCS L+E  SS
Sbjct: 105 VELPSSIGNLINLEAFYFHGCSSLLELPSS 134


>At5g35690.1 68418.m04267 expressed protein
          Length = 603

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 131 LLNFPAEIELCGVVKFGETLTTDST 205
           +LNFPA +E+  VV F + + ++ST
Sbjct: 547 ILNFPAAVEILSVVGFVDEMVSEST 571


>At5g08500.1 68418.m01007 transmembrane CLPTM1 family protein
           contains Pfam profile PF05602: Cleft lip and palate
           transmembrane protein 1 (CLPTM1)
          Length = 590

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +2

Query: 44  LMYDGTLLVVGFSLESFETETEKNSYSQLLLNFPAEIELCGVV 172
           L Y   LLVVGFS+ S   E  K+ YS +L +  + + + G +
Sbjct: 447 LSYVLLLLVVGFSIYSLAYERHKSWYSWILSSLTSCVYMFGFI 489


>At1g75290.1 68414.m08746 isoflavone reductase, putative similar to
           SP|P52577 Isoflavone reductase homolog P3 (EC 1.3.1.-)
           {Arabidopsis thaliana}; contains Pfam profile PF02716:
           Isoflavone reductase
          Length = 323

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +2

Query: 95  ETETEKNSYSQLLLNFPAEIELCGVVKFGETLTTDSTTK-EILQDVDITDNPLIIIINRE 271
           + E E   Y+ L+ N+ A   L  +V+    LT+    K +I  D ++     I +IN+E
Sbjct: 140 DIEAEGIPYTYLVTNYFAGYYLPTLVQLEPGLTSPPRDKVKIFGDGNVKVEYFIAVINKE 199

Query: 272 KDMKAHFI 295
           +D+ A+ I
Sbjct: 200 EDIAAYTI 207


>At5g18840.1 68418.m02239 sugar transporter, putative similar to
           ERD6 protein {Arabidopsis thaliana} GI:3123712,
           sugar-porter family protein 1 [Arabidopsis thaliana]
           GI:14585699; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 482

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +2

Query: 86  ESFETETEKNSYSQLLLNFPAEIELCGVVKFGETLTTDSTTK-EILQDVDIT 238
           E  E E+E N  S L++ F   + +CG  +FG  +   + T+  I QD++++
Sbjct: 29  EDDEKESENNE-SYLMVLFSTFVAVCGSFEFGSCVGYSAPTQSSIRQDLNLS 79


>At4g01830.1 68417.m00240 multidrug resistance P-glycoprotein,
           putative similar to multidrug resistant P-glycoprotein
           GI:4204793 from [Solanum tuberosum]
          Length = 1230

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = +2

Query: 422 KNSLQNKRKKIASGQVSFHIDSTQVYLFGVAS----DVGLTGTSTEATVGELVDSMSPEQ 589
           K +L+   K +   ++ F  DST V L  V S      G+         GEL+D+M P Q
Sbjct: 3   KGNLEANTKTVPFYKLFFFSDSTDVLLMIVGSIGAIANGVCSPLMTLLFGELIDAMGPNQ 62

Query: 590 PSKK 601
            +++
Sbjct: 63  NNEE 66


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,427,851
Number of Sequences: 28952
Number of extensions: 287185
Number of successful extensions: 805
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)