Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0383
         (720 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    25   0.82 
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   4.4  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   7.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.6  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   7.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   7.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   7.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   7.6  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    21   7.6  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 271 CGTCHIELIRNGSNKCFSL 327
           C TC  E   NG+NKCF++
Sbjct: 693 CTTCFCE---NGNNKCFTM 708


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/41 (26%), Positives = 16/41 (39%)
 Frame = -2

Query: 194 DCMQQSCECCDGCVE*REWIE*IC*RKSESGTCDREAEKCA 72
           DC    CE    CV+     + IC    E   C+   + C+
Sbjct: 71  DCKVNPCENGGTCVDKINAFQCICKEGWEGALCNINTDDCS 111


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 135 YPFSLLHTSIATFATLLHAIAFYPPL 212
           +P++ ++T  A  A++ HA A   PL
Sbjct: 135 WPYAAVYTDPAFAASIFHAAATSLPL 160


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 580 WR*LSLRNAHVRSYAILPM 524
           W  LS  N H+R   +LPM
Sbjct: 528 WPLLSTINRHLRGNELLPM 546


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 3   FIVNILLPISFSFCLITC 56
           F VN+ +P+S S  +  C
Sbjct: 410 FPVNLTIPVSISLLIAAC 427


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 3   FIVNILLPISFSFCLITC 56
           F VN+ +P+S S  +  C
Sbjct: 410 FPVNLTIPVSISLLIAAC 427


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 3   FIVNILLPISFSFCLITC 56
           F VN+ +P+S S  +  C
Sbjct: 410 FPVNLTIPVSISLLIAAC 427


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 3   FIVNILLPISFSFCLITC 56
           F VN+ +P+S S  +  C
Sbjct: 410 FPVNLTIPVSISLLIAAC 427


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +3

Query: 654 CPPEYDPVC 680
           CPP Y+P C
Sbjct: 33  CPPIYEPSC 41


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,342
Number of Sequences: 336
Number of extensions: 3268
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)