Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0383
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    28   1.2  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   4.7  

>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 30  SFSFCLITCSYHPKRAL-LSFSVTGATFRLPLTYSFYPFSLLHTSIATFA 176
           S  F LIT S  PK A+ L     G   R  LT+SFYP  +  TS   FA
Sbjct: 206 SNEFLLITGS--PKDAIGLFVDSQGNVTRSTLTFSFYPKHVFSTSHYVFA 253


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = -1

Query: 324 TKAFVGPVPY*FNVACATLGLECCL----IHKYSLECTETTKVADKR 196
           T AFV  + + F + CA +GL  CL     H Y   C   T+  +++
Sbjct: 9   TSAFVSSLVFNFAIFCAFIGLFLCLRPREKHVYQPRCIIDTQPKEEK 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,592,807
Number of Sequences: 5004
Number of extensions: 51602
Number of successful extensions: 129
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)