Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0383
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1100 + 30894575-30895012,30896082-30897044                       29   2.8  
02_02_0257 - 8366452-8367087                                           29   4.9  
02_01_0243 - 1601977-1602834,1602857-1603063                           29   4.9  

>04_04_1100 + 30894575-30895012,30896082-30897044
          Length = 466

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 82  SASLSQVPLSDFL*HIHSIHSRYSTHPSQHSQLCCM 189
           +A   +  L  F  H+  +H+R +  P +H + CCM
Sbjct: 254 AAGPGRTKLEAFTAHLWQLHARAAASPPRHRRSCCM 289


>02_02_0257 - 8366452-8367087
          Length = 211

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
 Frame = -1

Query: 639 PRTGTAPGSASAAPRTRACCGDSSRYEM----HTCARTLYFRCV 520
           P  G   G A+AAP    C G+  + EM      C    + RC+
Sbjct: 138 PPAGEGEGGAAAAPECAVCLGEVEKGEMAKRLPACLHVFHQRCI 181


>02_01_0243 - 1601977-1602834,1602857-1603063
          Length = 354

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 630 GTAPGSASAAPRTRACCGDSSRYEMHTCA 544
           G    SASAAP T +CC   +R    T A
Sbjct: 84  GATCASASAAPATASCCSSGTRAAAATAA 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,784,614
Number of Sequences: 37544
Number of extensions: 362089
Number of successful extensions: 1106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)