Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0383
(720 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 51 7e-07
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 51 7e-07
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr... 37 0.013
U40954-1|ABA00179.1| 251|Caenorhabditis elegans Hypothetical pr... 31 1.1
U53149-1|AAD31546.1| 328|Caenorhabditis elegans Prion-like-(q/n... 28 5.8
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 51.2 bits (117), Expect = 7e-07
Identities = 39/133 (29%), Positives = 57/133 (42%), Gaps = 1/133 (0%)
Frame = +3
Query: 324 SECELRRLTCGQHVVAVAASHCRTTALCHEHCPDTPAFICGSDNRFYKNECLMKKENCG* 503
S CE ++ CG V C C D +C ++ + NEC MKK++C
Sbjct: 368 SPCE--KMECGFWGSCVVKPDRTAECECPNRCEDVMRPVCATNGETFDNECEMKKKSCET 425
Query: 504 QRLHFV-HIGSIAYERTCAFRNESYRHSKHVFVVPLKRCLARFQYAGCARVCPPEYDPVC 680
+ + V H G+ CA + + V V +C+ C C E+ VC
Sbjct: 426 KSMIKVKHQGTCGIG-VCATFDSCKKPQVCVVVDGKPKCV-------CPS-CTDEFKEVC 476
Query: 681 GTDDKTYSNKCFL 719
G+D KTYSN+C L
Sbjct: 477 GSDGKTYSNECRL 489
Score = 44.0 bits (99), Expect = 1e-04
Identities = 29/101 (28%), Positives = 41/101 (40%)
Frame = +3
Query: 417 CPDTPAFICGSDNRFYKNECLMKKENCG*QRLHFVHIGSIAYERTCAFRNESYRHSKHVF 596
C D +CGSD + Y NEC ++ C Q+ FV S C + E
Sbjct: 468 CTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKYNSAC--EACKLKKEKCDFYSACV 525
Query: 597 VVPLKRCLARFQYAGCARVCPPEYDPVCGTDDKTYSNKCFL 719
V ++ + C E VCGTD TYS++C +
Sbjct: 526 VGENEKAECKCP-DDCPSYEMEEGKEVCGTDGVTYSSECHM 565
Score = 41.5 bits (93), Expect = 6e-04
Identities = 29/108 (26%), Positives = 38/108 (35%)
Frame = +3
Query: 390 RTTALCHEHCPDTPAFICGSDNRFYKNECLMKKENCG*QRLHFVHIGSIAYERTCAFRNE 569
R C E C A +CG+D + Y NEC +K C Q+ V E
Sbjct: 314 RPECKCSEQCTMNSAHVCGTDGKTYLNECFLKLAACKEQKDILVWKRGNCDEAGSPCEKM 373
Query: 570 SYRHSKHVFVVPLKRCLARFQYAGCARVCPPEYDPVCGTDDKTYSNKC 713
V P R C C PVC T+ +T+ N+C
Sbjct: 374 ECGFWGSCVVKP-----DRTAECECPNRCEDVMRPVCATNGETFDNEC 416
Score = 37.1 bits (82), Expect = 0.013
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +3
Query: 330 CELRRLTCGQHVVAVAASHCRTTALCHEHCP----DTPAFICGSDNRFYKNECLMKKENC 497
C+L++ C + V + + C + CP + +CG+D Y +EC MKK C
Sbjct: 511 CKLKKEKCDFYSACVVGENEKAECKCPDDCPSYEMEEGKEVCGTDGVTYSSECHMKKSAC 570
Score = 35.5 bits (78), Expect = 0.038
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +3
Query: 642 CARVCPPEYDPVCGTDDKTYSNKCFL 719
C+ C VCGTD KTY N+CFL
Sbjct: 319 CSEQCTMNSAHVCGTDGKTYLNECFL 344
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 51.2 bits (117), Expect = 7e-07
Identities = 39/133 (29%), Positives = 57/133 (42%), Gaps = 1/133 (0%)
Frame = +3
Query: 324 SECELRRLTCGQHVVAVAASHCRTTALCHEHCPDTPAFICGSDNRFYKNECLMKKENCG* 503
S CE ++ CG V C C D +C ++ + NEC MKK++C
Sbjct: 376 SPCE--KMECGFWGSCVVKPDRTAECECPNRCEDVMRPVCATNGETFDNECEMKKKSCET 433
Query: 504 QRLHFV-HIGSIAYERTCAFRNESYRHSKHVFVVPLKRCLARFQYAGCARVCPPEYDPVC 680
+ + V H G+ CA + + V V +C+ C C E+ VC
Sbjct: 434 KSMIKVKHQGTCGIG-VCATFDSCKKPQVCVVVDGKPKCV-------CPS-CTDEFKEVC 484
Query: 681 GTDDKTYSNKCFL 719
G+D KTYSN+C L
Sbjct: 485 GSDGKTYSNECRL 497
Score = 44.0 bits (99), Expect = 1e-04
Identities = 29/101 (28%), Positives = 41/101 (40%)
Frame = +3
Query: 417 CPDTPAFICGSDNRFYKNECLMKKENCG*QRLHFVHIGSIAYERTCAFRNESYRHSKHVF 596
C D +CGSD + Y NEC ++ C Q+ FV S C + E
Sbjct: 476 CTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKYNSAC--EACKLKKEKCDFYSACV 533
Query: 597 VVPLKRCLARFQYAGCARVCPPEYDPVCGTDDKTYSNKCFL 719
V ++ + C E VCGTD TYS++C +
Sbjct: 534 VGENEKAECKCP-DDCPSYEMEEGKEVCGTDGVTYSSECHM 573
Score = 41.5 bits (93), Expect = 6e-04
Identities = 29/108 (26%), Positives = 38/108 (35%)
Frame = +3
Query: 390 RTTALCHEHCPDTPAFICGSDNRFYKNECLMKKENCG*QRLHFVHIGSIAYERTCAFRNE 569
R C E C A +CG+D + Y NEC +K C Q+ V E
Sbjct: 322 RPECKCSEQCTMNSAHVCGTDGKTYLNECFLKLAACKEQKDILVWKRGNCDEAGSPCEKM 381
Query: 570 SYRHSKHVFVVPLKRCLARFQYAGCARVCPPEYDPVCGTDDKTYSNKC 713
V P R C C PVC T+ +T+ N+C
Sbjct: 382 ECGFWGSCVVKP-----DRTAECECPNRCEDVMRPVCATNGETFDNEC 424
Score = 37.1 bits (82), Expect = 0.013
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +3
Query: 330 CELRRLTCGQHVVAVAASHCRTTALCHEHCP----DTPAFICGSDNRFYKNECLMKKENC 497
C+L++ C + V + + C + CP + +CG+D Y +EC MKK C
Sbjct: 519 CKLKKEKCDFYSACVVGENEKAECKCPDDCPSYEMEEGKEVCGTDGVTYSSECHMKKSAC 578
Score = 35.5 bits (78), Expect = 0.038
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +3
Query: 642 CARVCPPEYDPVCGTDDKTYSNKCFL 719
C+ C VCGTD KTY N+CFL
Sbjct: 327 CSEQCTMNSAHVCGTDGKTYLNECFL 352
>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
protein F29G6.1 protein.
Length = 1170
Score = 37.1 bits (82), Expect = 0.013
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +3
Query: 654 CPPEYDPVCGTDDKTYSNKCFL 719
CP PVCGTD+ TY+N CFL
Sbjct: 21 CPSVIRPVCGTDNVTYNNLCFL 42
Score = 36.3 bits (80), Expect = 0.022
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 2/113 (1%)
Frame = +3
Query: 387 CRTTALCHEHCPDTPAFICGSDNRFYKNECLMKKENCG*QRLHFVHIGSIAYERTCA--F 560
C C PD +C + EC + ENC ++L + ++ + C
Sbjct: 687 CPPVESCDTEKPDP---VCTDSGATFLTECELNIENCKLKKLDQPKLVVVS-QGICEKDM 742
Query: 561 RNESYRHSKHVFVVPLKRCLARFQYAGCARVCPPEYDPVCGTDDKTYSNKCFL 719
+ + +++ F P R C+ C YDP+CGT+ T++N C L
Sbjct: 743 LTDDFSSNRN-FQKPNIE-FKRENTFNCSMECDNSYDPLCGTNGVTFTNACSL 793
Score = 34.7 bits (76), Expect = 0.067
Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 24/129 (18%)
Frame = +3
Query: 405 CHEHCPDTPAFICGSDNRFYKNECLMKKENC--G*QRLHFVHIGSIA-------YERTCA 557
C C ++ +CG++ + N C ++KE C + + G + C
Sbjct: 768 CSMECDNSYDPLCGTNGVTFTNACSLQKEICESANSTIEVAYTGMCCDTNCPSDFSPVCD 827
Query: 558 FRNESYRHSKHVFVVPLKRCLA-----------RFQYAG----CARVCPPEYDPVCGTDD 692
+ ++++ H V KRC+A +F+ C CP EY PVC ++
Sbjct: 828 SKGSTHQNICHFGV---KRCIAERTFGDVLTIDKFEVCNEVKECNNACPKEYSPVCASNG 884
Query: 693 KTYSNKCFL 719
+ N+C L
Sbjct: 885 QNIVNECEL 893
Score = 33.9 bits (74), Expect = 0.12
Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 3/100 (3%)
Frame = +3
Query: 354 GQHVVAVAASHCRTTALCHEHCPDTPAFICGSDNRFYKNECLMKKENCG*QRLHFVHIG- 530
G + +C + C C D IC SD Y+N C +K+ C L + G
Sbjct: 569 GHQIHIATEENCISKEACQMPCTDDKHPICASDFSTYENLCQFRKQKCLDSELEVLFKGK 628
Query: 531 -SIAYERTCAFRNESYRHSKHVFVVPLK-RCLARFQYAGC 644
S + CA E+ V + + L +Q C
Sbjct: 629 CSECLDSPCALPAENSPDESFVCLEDQSTKSLCEYQMLSC 668
Score = 30.7 bits (66), Expect = 1.1
Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 20/119 (16%)
Frame = +3
Query: 417 CPDTPAFICGSDNRFYKNECLMKKENCG*QRLHFVHIGSIAYERTCA--------FRNES 572
CP +CG+DN Y N C ++ + L F + G+ ++ C E+
Sbjct: 21 CPSVIRPVCGTDNVTYNNLCFLRCVQRTNEDLLFFYNGTCCDKKECEKVGTPICDNFGET 80
Query: 573 YRHSKHV--FVVPLKRC---------LARFQYAGCARVCP-PEYDPVCGTDDKTYSNKC 713
+ + H F +K+ + R C C E+DPVC T+ Y N C
Sbjct: 81 HINDCHFAQFQCIMKKSMGLSLTKLHMGRCSSKDCNHNCTNTEFDPVCDTNGSVYRNLC 139
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +3
Query: 387 CRTTALCHEHCPDTPAFICGSDNRFYKNECLMKKENC 497
C C+ CP + +C S+ + NEC + K C
Sbjct: 862 CNEVKECNNACPKEYSPVCASNGQNIVNECELDKIRC 898
Score = 28.3 bits (60), Expect = 5.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 654 CPPEYDPVCGTDDKTYSNKC 713
C +DPVC T ++T+ N C
Sbjct: 257 CDKSWDPVCDTRNRTHKNVC 276
Score = 27.9 bits (59), Expect = 7.7
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +3
Query: 642 CARVCPPEYDPVCGTDDKTYSNKC 713
C C + P+C +D TY N C
Sbjct: 586 CQMPCTDDKHPICASDFSTYENLC 609
>U40954-1|ABA00179.1| 251|Caenorhabditis elegans Hypothetical
protein ZK813.6 protein.
Length = 251
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/23 (60%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Frame = +3
Query: 654 CPPEYDPVC---GTDDKTYSNKC 713
C PE DPVC G TYSNKC
Sbjct: 27 CKPEIDPVCVREGPYQYTYSNKC 49
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 642 CARVCPPEYDPVCGTDDKTYSNKC 713
C CP E++PVC +T++N C
Sbjct: 121 CTAPCPTEWNPVCDKKGQTHANFC 144
>U53149-1|AAD31546.1| 328|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 16
protein.
Length = 328
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Frame = -3
Query: 448 EPQMKAGVSGQCSWQSAVVRQCDAATATTC---CPHVNRRSSHSD*SICWTRSLLVQCG 281
EPQ + QC Q +QC A T C C N + S C + QCG
Sbjct: 264 EPQCENSCQNQCQAQQQSQQQCAQACQTGCVAQCQPANVSCMPASTSTCQCQPNYSQCG 322
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,989,292
Number of Sequences: 27780
Number of extensions: 320555
Number of successful extensions: 1011
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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