Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0383
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              33   0.002
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.95 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.8  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 33.5 bits (73), Expect = 0.002
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 642 CARVCPPEYDPVCGTDDKTYSNKCFL 719
           C R CP  + PVC ++ K Y+N C L
Sbjct: 106 CMRKCPRRHRPVCASNGKIYANHCEL 131



 Score = 27.9 bits (59), Expect = 0.10
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +3

Query: 402 LCHEHCPDTPAFICGSDNRFYKNECLMKKENC 497
           +C   CP     +C S+ + Y N C + +  C
Sbjct: 105 VCMRKCPRRHRPVCASNGKIYANHCELHRAAC 136


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 0.95
 Identities = 7/30 (23%), Positives = 20/30 (66%)
 Frame = +2

Query: 197 LLSATLVVSVHSKEYLCIRQHSKPSVAHAT 286
           +L  +++ + H+ EY+C  +++  + +H+T
Sbjct: 642 MLMISVITARHAGEYVCTAENAAGTASHST 671


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +2

Query: 167 NIRNSAACNRLLSATLVVSVHSKEYLCIRQHSKPSVAH 280
           NI      + LLS T + + HS +Y C+  +    V +
Sbjct: 663 NISQLDPYSSLLSITNLAAEHSGDYTCVAANPAAEVRY 700


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,046
Number of Sequences: 438
Number of extensions: 3898
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)