Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0383
         (720 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37110.1 68415.m04553 expressed protein contains Pfam profile...    29   4.1  
At4g31090.1 68417.m04413 expressed protein                             27   9.5  
At4g16770.1 68417.m02534 oxidoreductase, 2OG-Fe(II) oxygenase fa...    27   9.5  

>At2g37110.1 68415.m04553 expressed protein contains Pfam profile
           PF04749: Protein of unknown function, DUF614
          Length = 242

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = -2

Query: 212 KWRIKG--DCMQQSCECCDGCVE 150
           K+ ++G  + M +SC CC GC+E
Sbjct: 160 KFNLEGSFEAMNRSCGCCGGCIE 182


>At4g31090.1 68417.m04413 expressed protein
          Length = 250

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = -3

Query: 442 QMKAGVSGQCSWQSAVVRQCDAATATTCCPHVN--RRSSHSD 323
           Q  A + G C   + + R+ D A  T  CPH N   +  HS+
Sbjct: 153 QSYALICGNCRMHNGLARKEDFAYITYYCPHCNALNKPKHSE 194


>At4g16770.1 68417.m02534 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein low similarity to flavonol synthase from
           Petunia hybrida [SP|Q07512], Citrus unshiu [GI:4126403];
           contains Pfam domain PF03171, 2OG-Fe(II) oxygenase
           superfamily; non-consensus GG acceptor splice site at
           exon 8
          Length = 325

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 576 RHSKHVFVVPLKRCLARFQYAGCARVCPPEYDPVCGTD 689
           R S  VFV P   C+     + C+   PP++ PV   D
Sbjct: 271 RFSVAVFVDPDPNCVVECLESCCSETSPPKFPPVRARD 308


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,841,091
Number of Sequences: 28952
Number of extensions: 277900
Number of successful extensions: 691
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)