Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0379
         (742 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    23   2.0  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    23   2.0  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    23   2.6  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          23   2.6  

>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 353 VDPLK*LFFNNVLNSLCNFFE 291
           V+ L  LF N++L+ +C+ FE
Sbjct: 195 VNALDHLFLNDILSDICDKFE 215


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 353 VDPLK*LFFNNVLNSLCNFFE 291
           V+ L  LF N++L+ +C+ FE
Sbjct: 151 VNALDHLFLNDILSDICDKFE 171


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +3

Query: 522 YSYNSTR-NTLY-FNTIYSNY*NHQKYYS 602
           Y +N  + N  Y +N  YSNY N+Q+ +S
Sbjct: 204 YQFNDPQFNFNYQYNQAYSNYNNYQEGFS 232


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +3

Query: 522 YSYNSTR-NTLY-FNTIYSNY*NHQKYYS 602
           Y +N  + N  Y +N  YSNY N+Q+ +S
Sbjct: 224 YQFNDPQFNFNYQYNQAYSNYNNYQEGFS 252


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,412
Number of Sequences: 336
Number of extensions: 2066
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)